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Report for CCDS22916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22916.1 Public Mus musculus 9 Rgl3 23 108 98 CCDS HistoryNCBI Gene:71746Re-query CCDS DB by CCDS ID:22916.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045726.7 ENSMUSP00000035726.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045726.7Link to Ensembl Protein Viewer:ENSMUSP00000035726.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045726Re-query CCDS DB by Protein ID:ENSMUSP00000035726
Original member Current member EBI ENSMUST00000214026.1 ENSMUSP00000148965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214026.1Link to Ensembl Protein Viewer:ENSMUSP00000148965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214026Re-query CCDS DB by Protein ID:ENSMUSP00000148965
Original member NCBI NM_023622.4 NP_076111.2 Updated not alive Link to Nucleotide Sequence:NM_023622.4Link to Protein Sequence:NP_076111.2Re-query CCDS DB by Nucleotide ID:NM_023622Re-query CCDS DB by Protein ID:NP_076111
Current member NCBI NM_023622.5 NP_076111.2 Accepted alive Link to Nucleotide Sequence:NM_023622.5Link to Protein Sequence:NP_076111.2Re-query CCDS DB by Nucleotide ID:NM_023622Re-query CCDS DB by Protein ID:NP_076111Link to BLAST:NP_076111.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076111.2 709 Q3UYI5-1 709 100% 0 0

Chromosomal Locations for CCDS 22916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21971891 21972009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21974022 21974136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21974388 21974540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21975608 21975707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21975792 21975860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21975950 21976045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21976739 21976860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21976945 21976977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21977190 21977276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21977382 21977429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21980502 21980586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21980684 21980787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21981290 21981505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21981604 21981743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21987499 21987713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21987851 21987904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21988046 21988275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21988849 21988959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21989365 21989397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGAGAGGACAGCGGGCAAAGAGCTGGCCCTGGCGCCGCTGCAGGACTGGGGCGAGGAGACCGAGGATG
GCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGG
CCAGACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCC
GCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTG
CCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACC
GCCGCCGCCACCACCTCCTGCTGGGGTAGACAGCAAGAGGACAGAGGGACAAGATCTGAACTTCAGCAAG
AACCTGAGGGCTGTAGTTTCGGTGCTGGGTTCTTGGCTGCGAAATCATCCTCAGGACTTCCGGGATCCCC
CTGATCATCAGAACCTAGGCAATGTCCGAATCTTTTTGGGCTGGGCAGCCCCAGGAGGGGCAGAAGCCAG
GGAAGCAGAGAAACTTCTAGAAGATTTCTTGAAGGAGGCTAAGGGAGAGCAGACAGAGGAGGAAAAGCGA
CTGGCTTGGTCAGGCCCTCCTAGGATTGCCCAGACCCCCGGATCGGAGTTTGCGGAGGACTGTGTGGAAG
AGGAAGGCCCCAGTTCAGAAGGCCCAGAGCTCCTGGACTTCAGCGTGGATGACGTGGCAGAGCAGCTGAC
CCTTATGGATGTGGAGCTCTTCTTGCGCGTGAGGTCCTGCGAATGCCTGGGTTCCATGTGGTCTCAGCGC
GACCGGCCAGGAGCTGCAGGCATCTCTCCCACAGTGCGTGCCACCGTAGCCCAGTTCAATACGGTGACCG
GCTGCGTGCTGGGCTCGGTGCTCGCTGCGCCCGGCCTGGCGGCCTCGCAGAGGGCACAGCGCATCGAAAA
ATGGATTCGCATCGCCCAGCGGTGCAGGGAACTACGAAATTTCTCTTCATTGCGAGCGATCCTGTCCGCC
CTGCAATCTAACCCCATCTACAGACTCAAGCGCAGCTGGGGAGCTGTGAGCCGGGAACCGCTGTCTGTTT
TCAGGAAACTGTCACAGATTTTTTCTGATGAGGATAACCATCTCAGCAGCCGAGCGATTCTTTCCCAGGA
GGAGACCACTGAGGATGATGACTGCCCCTCAGGAAGTCTGCCATCAAAACTGCCCCCGGGTCCTGTCCCC
TACCTTGGCACCTTCCTCACAGACTTGGTTATGCTGGATACAGCCTTACCGGATACGTTGAAGGGAAACC
TCATCAACTTTGAAAAGAGGAGGAAGGAGTGGGAGATCCTGGCCCGAATCCAGCAGCTACAGCAACGCTG
CCAGCGCTACAGCCTGAGCCCCCGCCCGCCAATCCTGGCTGCACTTCGAGCCCAGCGCCAGCTCAGCGAG
GAGCAAAGCTACCGAGTCTCCCGTGTTATTGAGCCACCAGCTGCCTCCTGTCCCAGCTCCCCTCGTATCC
GGCGACGCATCAGCCTCACAAAGCGTCTCAGTGCGAAGCTGTCCCGAGAGAAGAACTCATCTCCTGGCGG
GAGTCCCGGGGATCCGTCCTCACCTACCTCCAGTGTGTCTCCAGGTTCACCCCCATCCAGCCCTAGAAAC
CGAGAGCCTCCTCCTCCGGGCAGTCCTCCAGCCTCCCCAGGGCCTCAGAGCCCCAGCACCAAGCTCTCCC
TGACCATGGACCCACCAGGGCCCTGGCCCGTGACCTTGACTCCGAGCAGCTCCCGAGTTCCCCTCCTCGG
GCAGCAGACGTCAGAGGCCCGCGTCATCAGAGTCAGCATCAACAATAACCACGGGAACCTGTATCGGAGC
ATCTTGCTTACTTGTCAGGACAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCC
AGCCCTGGGCCCGTGACTACCAGCTCTTCCAGGTCCTGCCTGGGGACAGAGAGCTCCTGATTCCAGACGG
TGCCAACGTCTTCTACGCTATGAGCCCAGCTGCCCCTGGTGACTTCTTGCTTCGTCGGAAAGAGGGGACA
GGACATACACTGTCTGCCTCCCCAACCTGA

Translation (709 aa):
MERTAGKELALAPLQDWGEETEDGAVYSVSLRRQRSQRSTPERSGEGQTPIPATDTFLHYRTSKVRALRA
ARLERLVHELVSGDREQDPGFVPAFLATHRAFVPTARVLGFLLPPPPPPPPPPAGVDSKRTEGQDLNFSK
NLRAVVSVLGSWLRNHPQDFRDPPDHQNLGNVRIFLGWAAPGGAEAREAEKLLEDFLKEAKGEQTEEEKR
LAWSGPPRIAQTPGSEFAEDCVEEEGPSSEGPELLDFSVDDVAEQLTLMDVELFLRVRSCECLGSMWSQR
DRPGAAGISPTVRATVAQFNTVTGCVLGSVLAAPGLAASQRAQRIEKWIRIAQRCRELRNFSSLRAILSA
LQSNPIYRLKRSWGAVSREPLSVFRKLSQIFSDEDNHLSSRAILSQEETTEDDDCPSGSLPSKLPPGPVP
YLGTFLTDLVMLDTALPDTLKGNLINFEKRRKEWEILARIQQLQQRCQRYSLSPRPPILAALRAQRQLSE
EQSYRVSRVIEPPAASCPSSPRIRRRISLTKRLSAKLSREKNSSPGGSPGDPSSPTSSVSPGSPPSSPRN
REPPPPGSPPASPGPQSPSTKLSLTMDPPGPWPVTLTPSSSRVPLLGQQTSEARVIRVSINNNHGNLYRS
ILLTCQDKAPSVVQRALEKHNVPQPWARDYQLFQVLPGDRELLIPDGANVFYAMSPAAPGDFLLRRKEGT
GHTLSASPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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