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Report for CCDS20058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20058.1 Public Mus musculus 6 Sval1 23 108 98 CCDS HistoryNCBI Gene:71578Re-query CCDS DB by CCDS ID:20058.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031898.4 ENSMUSP00000031898.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031898.4Link to Ensembl Protein Viewer:ENSMUSP00000031898.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031898Re-query CCDS DB by Protein ID:ENSMUSP00000031898
Original member Current member NCBI NM_027832.3 NP_082108.1 Accepted alive Link to Nucleotide Sequence:NM_027832.3Link to Protein Sequence:NP_082108.1Re-query CCDS DB by Nucleotide ID:NM_027832Re-query CCDS DB by Protein ID:NP_082108Link to BLAST:NP_082108.1

Chromosomal Locations for CCDS 20058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41951656 41951750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41953214 41953316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41955416 41955527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41955820 41955965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGCTTCTCTTCAAATTCTCTCCCAGCCCCAAGCTGTTACACACTTCCTGATTCTGTGCTTAATTCTGG
AGATTGCCTCTGGTCAGGATAATAGGAACAATCTGCTTTCACTAAATTTGAAAGTTTCTTCAATGAACAA
GGCAAATGAATTTGCAGTAACACTCACAGTTACAAATAACGTGGATAAATGCATGGTGGTGAAAATCAGT
ATTGAGGACAATCCGAACATCAAATATCTTTCTGCTAAAGCAACTTACACTGCTTGCATTTGTACTGTAA
ACAACTACTTCTGGGATATTCAAGTCTTTGCAAATACTGTTTTACAAGGCAAAGCAGAAGTTGTTTCAGC
TAAGGAGATATGTCCTGATGGTGAAAACATATTTCCAGTAACTTCTTATGTTGAGACGGTTACAGGTGAA
ATCCTTGTAACACCAAGAACTAGATGTCCCCCATAG

Translation (151 aa):
MASLQILSQPQAVTHFLILCLILEIASGQDNRNNLLSLNLKVSSMNKANEFAVTLTVTNNVDKCMVVKIS
IEDNPNIKYLSAKATYTACICTVNNYFWDIQVFANTVLQGKAEVVSAKEICPDGENIFPVTSYVETVTGE
ILVTPRTRCPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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