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Report for CCDS24949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24949.1 Public Mus musculus 11 Zmynd15 23 108 98 CCDS HistoryNCBI Gene:574428Re-query CCDS DB by CCDS ID:24949.1Re-query CCDS DB by GeneID:574428See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039093.9 ENSMUSP00000048816.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039093.9Link to Ensembl Protein Viewer:ENSMUSP00000048816.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039093Re-query CCDS DB by Protein ID:ENSMUSP00000048816
Original member Current member NCBI NM_001029929.3 NP_001025100.1 Accepted alive Link to Nucleotide Sequence:NM_001029929.3Link to Protein Sequence:NP_001025100.1Re-query CCDS DB by Nucleotide ID:NM_001029929Re-query CCDS DB by Protein ID:NP_001025100Link to BLAST:NP_001025100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025100.1 736 Q8C0R7-1 736 100% 0 0

Chromosomal Locations for CCDS 24949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70460570 70461140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70461784 70462021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70462111 70462266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70462523 70462683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70463439 70463591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70463916 70463996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464149 70464265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464356 70464444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464533 70464631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464780 70464933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465107 70465165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465339 70465499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465915 70466086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGAGTTTGTGTCTGGATACCGAGACGAGTTCCTCGATTTTGCTGCTCTTCTCTTTGGCTGGTTCCGCA
AGTTTGTGGCAGAGAGGGGGACCATGGGGACCAGCCTTGAGGGCCGATGGCGTCAACTGGAGTCACAGAT
AAGGAGGCTGCCTCAGGATCCTGCCCTTTGGGTGCTCCATGTCTTACCAAACCGCAGTGTGGGCATCAGC
CTGGGGCAAGGTGCCGAGCCAGGTCCTGGGCCAGGCCTAGGGGCTTCCCGGCTCCTGGGAGATGAGCCTC
CACTTCACCTGAGAGACCTGAGTCCTTATGTCAGTTTTGTCAGCCTAGAGGATGGGGAAGAAGGGGAGGA
GGAGGAGGAAGATGAGGAGCATGGAGAGAGGCCAGGCATGGAGAAGGTGGAACCACAGGAGGGTGGGGAG
CCAGCCCCTCCAAGCAAGAGATTCCCCCAAGAAGCAAAGCCTGCTCCAGAGTCAGAGGTGACCCAGCAGG
AGGCAAGCCGAGAAGAAGGCAGCAGAGAGGAGCGACCAGAGGATGAGAGGGCTCCTGAAAAGAGGAAAGG
ACAGAAGAATGCAGAGGCTGCCCCCCTGCACCTTTCCTGCCTTTTGCTGGTGACGGACGAGCATGGCACC
ATCTTGGGCATTGATCTGCTAATGGATGGAGCCCAGGGGAGTGTAGGCCAGAACCCAGGCACTGAGAATC
TGGCTCCTCGGGCCTATGCTCTCCTCTGTCATAGCATGGCCTGCCCTATGGGCTCTGGGGACCCCCGCAA
GCCCCGACAGCTTACCGTAGGAGACGCCCATCTCCATCGAGAGCTAGAGAGCCTGGTCCCAAGGCTGGGT
GTGAAGTTGGCAAAAACCCCAATGCGCACGTGGGGTCCTCGGCCAGGTTTTACTTTTGCCTCCCTTCGGG
CTCGAACCTGCCATGTTTGTCACAAGCACAGCTTTGAGGTGAAGTTGACACCCTGCCCCCAGTGCAGTGC
AGTCTTGTACTGTGGAGAGGCTTGTCTCCAGGCTGATTGGCGGCGATGCCCAGATGACGTGAGCCACCGA
TTCTGGTGCCCAAGGCTCTCAGCGTTCATGGAGCGGGTCGGAGAACTGGCAAGTTTGCCTTTCACCTATA
CTGCAGAAGTTACCAGTGAAACCTTTAACAAGGAAGCTTTCCTGGCCTCCCGAGGCCTCACTCGTGGTTA
TTGGACCCAGCTCAGCATGCTGATTCCAGGGCCGGGTGCCCCCAGGTACCCCTGGGGCAGCACATCATCC
CTCAGCTGCCTTCTCAACGGTGATCCTTACCAGCTTCTGCAGGGAGACGGGCCTGCCTTGATGCCTCCGG
TGCCCCTCGAGCCACCCAGGAGCCTCTTTGGTTCATGGCAGGATTACTACACGTGGCGGGGCCTCAGCCT
GGACTCCCCCATGGCTGTGCTTCTCACCTACCCACTGACGGTGTACTATGTCATCACCCACCTGGTACCC
CAGTCCTTCCCTGAGCTCAACATCCAGAACAAGCAATCCCTGAAGATCCACGTGGTGGAGGCTGGCAAGG
AATTCGATCTCGTCATGGTGTTTTGGGAGCTCTTGGTCCTTCTCCCCCATGTGGCCCTGGAGCTACAGTT
TGTGGGTGACAGCCTGCCACCTGAGAGTGACCAGCAGCATTTTACTATGCAGAGGGATGGACCTGAGGTG
TCTCTGCGTCCTGGTTCTGGAGTATCAGCACGGTTCAACTCTGGGACTAAGGAGAAGGGAGGTCGAAGGG
ACCTGCAAATCAGGGTGTCTGCCAGGCCCTATCACCTGCTCCAGGGACCCAAGCCTGACCTGGTTATTGG
ATTTAACTCCGGCTTTGGTCTCAAAGATACATGGCTGAGCTCTCTACCCCGGTTACAGTCTCTCCGAGTG
CCAGCATTCTTCACTGAGAGCAGTGAGTACGGCTGTGTGATGGACGATCAGACTATGGCGGTGGCCACCG
GAGGGGGCACCAGCTCGCCACAGCCCAACCCCTTCCGCTCCCCATTCCGCCTTAGAGCAGCTGACAACTG
TATGCCCTGGTACTGCAACGCCTTCATCTTCCATTTGGTCTACAAGCCTCCCCAAGGCGGCACAGTCCGC
TCGGCTCCCGGCCCTGCACCTAGACCCCCAACTCCCGCTGCACCTCCTGTCCCGGCTCGAAGGCGCCGAG
GAGAAAAGAAAGCTGCACGCGGGCCCCGCCGGCGCAGATGA

Translation (736 aa):
MEFVSGYRDEFLDFAALLFGWFRKFVAERGTMGTSLEGRWRQLESQIRRLPQDPALWVLHVLPNRSVGIS
LGQGAEPGPGPGLGASRLLGDEPPLHLRDLSPYVSFVSLEDGEEGEEEEEDEEHGERPGMEKVEPQEGGE
PAPPSKRFPQEAKPAPESEVTQQEASREEGSREERPEDERAPEKRKGQKNAEAAPLHLSCLLLVTDEHGT
ILGIDLLMDGAQGSVGQNPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRELESLVPRLG
VKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHR
FWCPRLSAFMERVGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRYPWGSTSS
LSCLLNGDPYQLLQGDGPALMPPVPLEPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLTVYYVITHLVP
QSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQHFTMQRDGPEV
SLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLSSLPRLQSLRV
PAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLVYKPPQGGTVR
SAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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