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Report for CCDS25760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25760.1 Public Mus musculus 11 Ccdc57 23 108 98 CCDS HistoryNCBI Gene:71276Re-query CCDS DB by CCDS ID:25760.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056781.4 ENSMUSP00000050996.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056781.4Link to Ensembl Protein Viewer:ENSMUSP00000050996.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056781Re-query CCDS DB by Protein ID:ENSMUSP00000050996
Original member NCBI NM_027745.1 NP_082021.1 Updated not alive Link to Nucleotide Sequence:NM_027745.1Link to Protein Sequence:NP_082021.1Re-query CCDS DB by Nucleotide ID:NM_027745Re-query CCDS DB by Protein ID:NP_082021
Current member NCBI NM_027745.2 NP_082021.1 Accepted alive Link to Nucleotide Sequence:NM_027745.2Link to Protein Sequence:NP_082021.1Re-query CCDS DB by Nucleotide ID:NM_027745Re-query CCDS DB by Protein ID:NP_082021Link to BLAST:NP_082021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082021.1 1016 Q6PHN1 1016 100% 0 0

Chromosomal Locations for CCDS 25760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120826716 120826924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120860401 120860626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120861138 120861269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120866555 120866676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120873586 120873799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120878878 120879048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120881815 120881915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120885233 120885385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120885850 120886063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120894599 120894733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120895257 120895419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120897809 120897967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120901875 120902075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120903316 120903390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120903523 120903680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120903984 120904085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120919473 120919581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120921520 120921926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3051 nt):
ATGCTGCCGCTATGTTCAGAGCGGGAACTGAATGAGCTTTTGGCTCGAAAGGAGGAGGAATGGCGAGTCC
TCCAGGCCCACCGTGCGCAGCTGCAGGAGGCAGCTCTACAGGCTGCTCAGAACCGCCTGGAGGAGACACA
GGGGAAGCTGCAACGCCTACAGGAGGACTTTGTTTACAACCTTCAGGTGCTGGAAGAGCGGGACCGGGAG
CTGGAGCGCTATGATGTTGAGTTCACCCAGGCCCGCCAGCGGGAGGAGGCCCAACAAGCAGAGGCCAGTG
AGCTCAAGATAGAGGTGGCCAAGCTGAAACAAGACCTCACCAGGGAGGCCAGGCGAGTGGGGGAGCTGCA
GCATCAGCATCAGCTAATGCTGCAGGAGCATCGCTTGGAGTTGGAGCGCGTCCACAGTGACAAGAACAGC
GAACTGGCCCACCAGCGGGAACAGAATGAGCGCCTGGAGTGGGAACTGGAGCGAAAACTGAAGGAACTCG
ATGGTGAACTTGCTCTGCAGAGACAGGAGCTGCTGCTGGAGTTTGAATCTAAAATGCAGAGAAGAGAGCA
TGAGTTCCAGCTGAGGGCTGACGACATGAGCAACGTAGTCCTGACACATGAGCTCAAGATAAAACTACTA
AACAAAGAGCTGCAAGCTCTGAGAGACGCTGGAGCACGGGCAGCAGAGAGTCTGCAGAAGGCAGAAGCAG
AACACGTGGAATTAGAGAGGAAGCTGCAGGAGCGTGCCCGGGAACTCCAGGATCTGGAGGCCGTGAAGGA
CGCTCGGATAAAGGGCTTGGAGAAGAAGCTTTACTCGGCACAGCTGGCCAAGAAGAAAGCTGAGGAGACT
TTCAGGAGGAAACATGAAGAGCTTGACCGTCAAGCCAGGGAGAAAGACACAGTGCTGGCGGCAGTGAAGC
GCGCCCATGCAGAGGAGCTGCAGACGCTGGACGCCAAGGTGCTGGAGCTTCAGTTCCTCTGTGAAACCCT
GGAGGGACAACTGCGCAGGGCTGAGTGCACAAGAGCAGAGGACGCCAAGGAGAAGAACGCCCTTACTGAC
AAATTTCGTGAAGATGCGGCAGCTCTGAAAGCTGCCTGGGACGCCCAGATCACGCAGATGTCCAAGGAGA
CTGTCTCCAAAGACTTTCAGATTCACACGCTGCAGGAAGAAGAGATGAAGCTCAAGGCACAGGTGGCCAG
ATTCCAACAGGACATAGACAGGTACAAGCAGCAGCTGTCCCTGGCAGTGGAGAGGGGACAGAGCCTGGAG
CGTGAACAGGTACAGCTAGGCCTTGACTGGCAGCGTCGCTGCGATGATATTGAACGAGACCAGATCCAGA
AATCGGAGACTTTGATCGAAGGGCTGACCAAGGCCAGGGATCAGGTCGCTGCTAAACTCCAGGAGACAGA
GAAGGCACTGCGTCAGCAGGAGACTCTGCTGAAGGCTGTGTCACTGGAGCGAGACCAAGCTATGGAAACC
CTACGTACACATGGGCTCCTTCCTGGACAGGAGGCACAGGTACCTCCTCAGCAGCATGAAGGAGAAATAA
GGGCAGATTCTCCATCTACTGAGATCCAGAGGCTACAGGAACAGAATGCAGGTCTGCGGAACGCTGTTTC
ACAGATGAGGAGAGAGATGGAGATGCTGAGCGGTCATCTCCCCCCTGCCCAGCCAGAAGAGTGTTCAAAT
GCAGACCCTGATCCCAAGGCTGGAGGAGACTCCACCCCTCCAGATTATGTTCTGACCCTTGAAGCAGAAA
TGCAAAATCTAAAGCATAAACTTAAGGCATTGGAGGAACAACTACAAAGCACAGAAGAGCCAGTGAAGAC
GTCCGTGGCCACTGCTGATCCACACCATGGTGTCCACAGCTCTGCAGCAGCAGCTGACGCAGCTCTGGCA
GACCAGACATCCACTGCATTAGCACTCAGAAAACTTGGAGACAGAGTGCACCTCTTGAACTTGCTGGTGA
CACAGCTCAAAAGGAAGCTGCGGCAGAAGCCCCGGGAGCTGGTCCCTGTCCAACACGAGGTCCCCAGTGA
GGTGGACCAGGTGCACCTGGAGGTTTTGGAGCTGCAGAAGCAGGTGGCTGAGTTAAGGAAGCATCTCAAG
GTGACACCCCAGGGAGAGCCTTCATCCAGGGAGCAGTTACAGAGACAGGGTGTGGCAGACCGGTACCCCA
TGGGCATGGAAGACCAGACGGAGTCCCCTACTTTCCCCCAGGAAGGGGCACAGCCTCCACAGACCATATA
TGTGACCCATCTGCAAAGGAAATTAAAGGATGCAGCTAGGAAAATACTCAGCCTCCGCCTAGAGAGGGAA
CAGCTCCTAGAAATGGGAAATAGACTCCGAGCTGAGCAAGGCCACGCAAAAGGGAAACCAACTCCTTGCC
CAGGTCCTCCCACCTCTGAACCCCAGGACCCCCAGGAGGTGCCTGAGAGATCTTTGGACCGTGGCCCACC
TTTGGGACAATTGCAGCCCTACTCAACAACTCAGGACCCCAGGCACACCAAGAGAAGATGTGCTTCTGAG
TATGCAGGGAAGAGTCAACCCCACTCAGCACAAGTGGGCAGCAAAACCAACACCCCACGAGGCCACAAGG
CAGAAATGGCGTCAAGGCCTGCTCAGCTCTCACAGAAGCAGCACAGAATCCCCACAGAGACTTGGAAGCC
AGTTTATCAGAAAGAAAACAGGACCCCAAAGCTACCACAGGCTCATGAAGTCCCTGAAGAAAGTGACCAC
CGTACCCACAGATCGTCTTCATTGGCCAGCAGTTCCCTCCAAGACATCTGGAGGCTGCTAGAGCTGGGAT
CCAGCCCTTCGGGCGTCCCCTCACAGGATAACTCTGTTGCAGAGTGTCCAGCACCTTCAAGACCCAGCTG
TTTCCAAAAGGTCAACCGGAGCCCTGTCCCCATACAAAAGGCCTTTGCTGTCAAAGGGCTAAAGATGGAA
GCTCAGCCAAAAGCCACACCCCCCAGACCCAGCAAGTCTCACCCAGCTAAACCTACAAACTGCCAGCAGC
AGCGGCCCTCTAGGATCCGCAACTACAACCTCAAGGACTAA

Translation (1016 aa):
MLPLCSERELNELLARKEEEWRVLQAHRAQLQEAALQAAQNRLEETQGKLQRLQEDFVYNLQVLEERDRE
LERYDVEFTQARQREEAQQAEASELKIEVAKLKQDLTREARRVGELQHQHQLMLQEHRLELERVHSDKNS
ELAHQREQNERLEWELERKLKELDGELALQRQELLLEFESKMQRREHEFQLRADDMSNVVLTHELKIKLL
NKELQALRDAGARAAESLQKAEAEHVELERKLQERARELQDLEAVKDARIKGLEKKLYSAQLAKKKAEET
FRRKHEELDRQAREKDTVLAAVKRAHAEELQTLDAKVLELQFLCETLEGQLRRAECTRAEDAKEKNALTD
KFREDAAALKAAWDAQITQMSKETVSKDFQIHTLQEEEMKLKAQVARFQQDIDRYKQQLSLAVERGQSLE
REQVQLGLDWQRRCDDIERDQIQKSETLIEGLTKARDQVAAKLQETEKALRQQETLLKAVSLERDQAMET
LRTHGLLPGQEAQVPPQQHEGEIRADSPSTEIQRLQEQNAGLRNAVSQMRREMEMLSGHLPPAQPEECSN
ADPDPKAGGDSTPPDYVLTLEAEMQNLKHKLKALEEQLQSTEEPVKTSVATADPHHGVHSSAAAADAALA
DQTSTALALRKLGDRVHLLNLLVTQLKRKLRQKPRELVPVQHEVPSEVDQVHLEVLELQKQVAELRKHLK
VTPQGEPSSREQLQRQGVADRYPMGMEDQTESPTFPQEGAQPPQTIYVTHLQRKLKDAARKILSLRLERE
QLLEMGNRLRAEQGHAKGKPTPCPGPPTSEPQDPQEVPERSLDRGPPLGQLQPYSTTQDPRHTKRRCASE
YAGKSQPHSAQVGSKTNTPRGHKAEMASRPAQLSQKQHRIPTETWKPVYQKENRTPKLPQAHEVPEESDH
RTHRSSSLASSSLQDIWRLLELGSSPSGVPSQDNSVAECPAPSRPSCFQKVNRSPVPIQKAFAVKGLKME
AQPKATPPRPSKSHPAKPTNCQQQRPSRIRNYNLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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