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Report for CCDS26460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26460.1 Public Mus musculus 13 Cage1 23 108 98 CCDS HistoryNCBI Gene:71213Re-query CCDS DB by CCDS ID:26460.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074969.10 ENSMUSP00000074499.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074969.10Link to Ensembl Protein Viewer:ENSMUSP00000074499.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074969Re-query CCDS DB by Protein ID:ENSMUSP00000074499
Original member Current member EBI ENSMUST00000110233.7 ENSMUSP00000105862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110233.7Link to Ensembl Protein Viewer:ENSMUSP00000105862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110233Re-query CCDS DB by Protein ID:ENSMUSP00000105862
Original member Current member NCBI NM_027724.2 NP_082000.2 Accepted alive Link to Nucleotide Sequence:NM_027724.2Link to Protein Sequence:NP_082000.2Re-query CCDS DB by Nucleotide ID:NM_027724Re-query CCDS DB by Protein ID:NP_082000Link to BLAST:NP_082000.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082000.2 849 Q5IR70-1 849 100% 0 0

Chromosomal Locations for CCDS 26460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38006089 38006173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38007940 38008008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38011348 38011418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38012392 38012496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38015680 38015787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38016411 38016491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38017297 38017407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38019167 38019313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38022413 38023468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38025283 38025803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38028103 38028190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38032365 38032472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGTCAGAGTCGGAAACAATAAATGTCAATGGTCCCTCTCAAGACTTCTCCTACTCAGACTCGCCCTTCT
GTATGGAAGCCAGCTTCTCCTCCTCAGACCTGCTTCAGAGTGAAACAAAGAATGTGAAAAGGGGAAATGA
GTCTACACACACGTTCTCTGAGGATATTTATAGCACAGAAGGCAGTTTGTTAGGTGATATCAACCTTGGG
AATTACCCAGAGAGTGAGCAGAATCAACCAGCTAACACTAGGCTTTCTTCCTTGAGACAATTTGAACCCA
TTTGCAAATTTCACTGGATAGAAGCGTTTAACGATGAAATGACAGTTGAAGACCTGAGGGGGGCGTTTTC
TTACTCGGAGAAGCCAGAGTTGCCAAGCCAGGTATACAATGATGCAGCAGATGGCAGTGAAAAGCCAGAT
CCATTTAAGGAAGAAAGTTCAGTGGAAAGTAGCATTTCCGAAAATAAGGACGAACTTGTTCCCGCGCCAG
TGAGGAAATCTCCAAGAAGTCTATGTCTAAACTACTACAGAGGAGAGGCACAGCCGCTCACAGAGGCGCC
ATTCGTGAGAAGTGCCGTCGTAGATGTCGGCCTCAATATCAGTCAGCCTCAAAGCTTTCTGGATAAAGAA
AATGTCTGTAAAAATGGTGACAATTCGTCTGATAGGGAGAATTGCTTCGAGCAGCTTGACTTGAGAGCTA
TTTATAAAGCAGAGGAGCCTGAAGTTTCTTCAAAAGAAGTACAGAATTCTGGAGAGATTTCTGAGCTATC
AGTTAGTCACCAGGAAGAAGTCACAGAAGATGGCGTTGACAGCCTCGCCATTACCTCACCGTGGTCTCCA
GCTGGCATCTTCAAGGGAAGTGGGCCTCAGGACAACTCCCTGAGGCCTGATAGAGAGGTCAGCTGTGAAG
GCTTAGAGCCTCTGGAAGAGGACATGGCTTTAAATGAAGCCTTGCAAAAATTAAAACAGACTAACAAAAA
GCAGGAACTGCAGATTCAAGACCTCCATGGTAAGAACTTGAACTTAGAAAATAGGGTTCAAGAACTACAG
ACAAAGGTCACCAAACAGCACGTGTTGGTTGATATCATAAATAAACTAAAGGTGAACATTGAGGAGTTAA
TCAATGATAAATACAACGTAATCCTAGAGAAGAATGACATCAACAAGAAACTTCAGGATCTGCAGGAAGC
TTCGGCTCACACCAAAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGAGCCTCCAGCTCCAGGTGAAA
AAGATTAAGGTCCATTACGTGCGCTTACAGGAAAGGTATATTGCTGAGATCCAGCAGAAGAACAGATCGG
CCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGACGAGGAGCTCCAGCGGCTGCAGCGCCA
CAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTGGACTTGCTGAAGCGGGAGAAGGAGATCCGGGAA
CAAGAGTTCTTGTCTTTTCAGGAGGAATTCCAGAGGCGGGAAAAGGAAAGCCTGAAAGAAAGGCGGAAAT
TGAAGTCGAGAGTTGAGAAGCTGGTCGCTCAAGTGAAAAGCTTGCTGTTCACCTGTGAGAGCGAGAGAGC
TCAAACCATGGCGCTCCAGCGGCAGGTCGAAGAGCTGAAGCTGGAGAACTTAGAACTCCGACAGCTGGCT
GCGAAGAGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAGGAAG
CGGTGGAGCCGGACATCACCCAGGAGACAAAGGGGACACATTGTAATTTGTTCCTGAATCGCTCTTCTTG
TAAAGAAAACCTGGAGCTCCAACCTCTGAAGAAAACTTCTCCGCTGGCCTCTGGAATTCACAGCCTTTTG
GCCCTGAGAATAGGACTTCTCACGTGTCAGGACCTTGCCACGCCTGATGCTGAGCTTTGCCAAGAGAGTA
AGAAAGCTAATGACATAATGCTGCAAAGACTGAAGGACTGTCAGCTTAAAAAGAAGGACTTAGATAAAGA
GCTATTGAAACATAAAAACAGAATTGCGACTCTTAAAGAGTTAATTGCTAGTGAAAAGGCACTTCAAGCC
CACACTATTGAGATCACAGATTTTGATGCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGG
CAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTCTTGATTACAAAGCTGGGAGGGCT
TCTGGAGAGCAAAGAAGACCACTACAGCAGACTCATTGAGGAGAATGACAAGTACCGGAGACACGTAGGC
AGCCTGATAAATAAGGTAACGTCATATGAAGAAATTATCAAATGTGCTGACCAAAGACTTGAGATATCAC
ATTCTCAGATTGCACACTTGGAAGAGAGGAATAGACATTTAGAAGATTTAATTAGAATGCCCAGAGAGAA
AGCCAAAAGGCCAAGACCAAGATTAGATAATCACCCAAAGTCCTTGACCTTGATAAGTCATCTTGAGGGC
CACCATAAAGAATGTTCTATTTCCTTGTGA

Translation (849 aa):
MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTEGSLLGDINLG
NYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSEKPELPSQVYNDAADGSEKPD
PFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEAQPLTEAPFVRSAVVDVGLNISQPQSFLDKE
NVCKNGDNSSDRENCFEQLDLRAIYKAEEPEVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSP
AGIFKGSGPQDNSLRPDREVSCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQ
TKVTKQHVLVDIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVK
KIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALDLLKREKEIRE
QEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTMALQRQVEELKLENLELRQLA
AKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNLFLNRSSCKENLELQPLKKTSPLASGIHSLL
ALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQA
HTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVG
SLINKVTSYEEIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEG
HHKECSISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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