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Report for CCDS25553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25553.1 Public Mus musculus 11 Psmc5 23 108 98 CCDS HistoryNCBI Gene:19184Re-query CCDS DB by CCDS ID:25553.1Re-query CCDS DB by GeneID:19184See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021049.8 ENSMUSP00000021049.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021049.8Link to Ensembl Protein Viewer:ENSMUSP00000021049.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021049Re-query CCDS DB by Protein ID:ENSMUSP00000021049
Original member Current member NCBI NM_008950.1 NP_032976.1 Accepted alive Link to Nucleotide Sequence:NM_008950.1Link to Protein Sequence:NP_032976.1Re-query CCDS DB by Nucleotide ID:NM_008950Re-query CCDS DB by Protein ID:NP_032976Link to BLAST:NP_032976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032976.1 406 P62196 406 100% 0 0

Chromosomal Locations for CCDS 25553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106256191 106256214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106256848 106256919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106260853 106260922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106261185 106261282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106261423 106261710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106261906 106262032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106262118 106262308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106262404 106262502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106262581 106262691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106262797 106262883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106263009 106263062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGCTTGATGGGCCAGAGCAGATGGAACTGGAAGAGGGGAAGGCAGGCAGTGGACTCCGTCAATATT
ATCTGTCCAAGATTGAAGAACTCCAGTTGATTGTAAATGATAAGAGCCAGAATCTCCGTAGACTGCAGGC
ACAGAGGAATGAGCTGAATGCAAAAGTTCGCCTGTTGCGGGAGGAGCTGCAGCTGTTGCAGGAACAGGGC
TCCTACGTTGGAGAAGTCGTGAGGGCCATGGATAAGAAAAAAGTATTGGTCAAGGTCCATCCTGAGGGCA
AATTTGTTGTTGATGTGGACAAGAACATTGATATCAACGATGTGACGCCCAATTGTCGGGTCGCTCTAAG
AAATGACAGCTACACTCTGCATAAGATCTTACCTAACAAGGTGGACCCTTTGGTGTCACTAATGATGGTG
GAGAAGGTGCCAGACTCAACCTACGAGATGATTGGCGGCCTGGACAAGCAGATCAAGGAGATTAAAGAAG
TGATCGAGCTGCCCGTGAAGCACCCCGAGCTCTTTGAAGCACTGGGCATCGCACAGCCAAAGGGAGTCCT
GCTCTACGGACCCCCAGGCACTGGGAAGACATTGTTGGCCCGCGCTGTGGCTCATCATACAGACTGTACC
TTTATTCGTGTCTCTGGCTCTGAACTGGTACAGAAATTCATCGGGGAAGGGGCAAGAATGGTGAGGGAGC
TGTTTGTCATGGCCCGAGAACATGCTCCATCCATCATCTTCATGGACGAGATTGACTCTATTGGCTCCTC
ACGGCTGGAGGGGGGCTCTGGAGGCGACAGTGAGGTACAGCGCACGATGCTGGAACTGCTCAATCAGCTG
GATGGCTTTGAGGCCACCAAGAATATCAAGGTTATCATGGCTACTAATAGGATTGATATCCTGGACTCTG
CCCTGCTTCGTCCTGGGAGGATTGACAGAAAAATTGAATTCCCACCCCCCAACGAGGAGGCCCGGCTGGA
CATTTTGAAAATCCACTCTCGGAAAATGAACTTGACCAGGGGGATCAACCTGAGGAAAATTGCTGAGTTG
ATGCCGGGAGCTTCAGGGGCTGAAGTGAAGGGTGTGTGCACAGAAGCTGGCATGTACGCCCTGCGGGAAC
GGCGTGTCCACGTCACTCAGGAGGACTTTGAGATGGCAGTAGCTAAGGTCATGCAAAAGGATAGTGAGAA
AAACATGTCCATCAAGAAGCTATGGAAGTGA

Translation (406 aa):
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQG
SYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMV
EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT
FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQL
DGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEL
MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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