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Report for CCDS23139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23139.1 Public Mus musculus 9 Pafah1b2 23 108 98 CCDS HistoryNCBI Gene:18475Re-query CCDS DB by CCDS ID:23139.1Re-query CCDS DB by GeneID:18475See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172450.2 ENSMUSP00000127851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172450.2Link to Ensembl Protein Viewer:ENSMUSP00000127851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172450Re-query CCDS DB by Protein ID:ENSMUSP00000127851
Original member Current member EBI ENSMUST00000214179.1 ENSMUSP00000149819.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214179.1Link to Ensembl Protein Viewer:ENSMUSP00000149819.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214179Re-query CCDS DB by Protein ID:ENSMUSP00000149819
Original member Current member NCBI NM_001357241.1 NP_001344170.1 Accepted alive Link to Nucleotide Sequence:NM_001357241.1Link to Protein Sequence:NP_001344170.1Re-query CCDS DB by Nucleotide ID:NM_001357241Re-query CCDS DB by Protein ID:NP_001344170Link to BLAST:NP_001344170.1
Original member Current member NCBI NM_001357243.1 NP_001344172.1 Accepted alive Link to Nucleotide Sequence:NM_001357243.1Link to Protein Sequence:NP_001344172.1Re-query CCDS DB by Nucleotide ID:NM_001357243Re-query CCDS DB by Protein ID:NP_001344172Link to BLAST:NP_001344172.1
Original member Current member NCBI NM_001357244.1 NP_001344173.1 Accepted alive Link to Nucleotide Sequence:NM_001357244.1Link to Protein Sequence:NP_001344173.1Re-query CCDS DB by Nucleotide ID:NM_001357244Re-query CCDS DB by Protein ID:NP_001344173Link to BLAST:NP_001344173.1
Original member Current member NCBI NM_001357245.1 NP_001344174.1 Accepted alive Link to Nucleotide Sequence:NM_001357245.1Link to Protein Sequence:NP_001344174.1Re-query CCDS DB by Nucleotide ID:NM_001357245Re-query CCDS DB by Protein ID:NP_001344174Link to BLAST:NP_001344174.1
Original member Current member NCBI NM_008775.3 NP_032801.2 Accepted alive Link to Nucleotide Sequence:NM_008775.3Link to Protein Sequence:NP_032801.2Re-query CCDS DB by Nucleotide ID:NM_008775Re-query CCDS DB by Protein ID:NP_032801Link to BLAST:NP_032801.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344170.1 229 Q61206 229 100% 0 0
NP_001344172.1 229 Q61206 229 100% 0 0
NP_001344173.1 229 Q61206 229 100% 0 0
NP_001344174.1 229 Q61206 229 100% 0 0
NP_032801.2 229 Q61206 229 100% 0 0

Chromosomal Locations for CCDS 23139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45968688 45968966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45972942 45973064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45975081 45975197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45976041 45976130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45978642 45978722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAGCCAAGGAGACTCGAACCCAGCAGCTATTCCACATGCCGCAGAAGATATTCAAGGAGATGACAGGT
GGATGTCTCAGCATAATAGGTTTGTTCTGGACTGTAAAGACAAAGAACCAGATGTGCTGTTTGTGGGGGA
CTCCATGGTACAGCTAATGCAGCAGTACGAGATATGGCGGGAGCTGTTTTCCCCACTTCATGCTCTTAAT
TTTGGAATTGGGGGAGATACAACACGACATGTTTTATGGCGACTAAAGAATGGAGAGCTGGAGAACATTA
AGCCTAAGGTCATTGTTGTCTGGGTAGGGACAAACAACCACGAAAATACAGCAGAAGAAGTAGCAGGTGG
GATTGAGGCTATTGTACAACTTATAAACACGCGGCAGCCACAGGCCAAGATCATTGTGCTGGGTCTGTTA
CCTCGAGGTGAGAAGCCCAACCCTTTAAGACAAAAGAATGCCAAGGTGAACCAGCTTCTCAAGGTTTCCC
TGCCGAAGCTTGCCAATGTGCAGCTCCTTGATATAGACGGGGGCTTCGTGCACTCGGACGGTGCCATCTC
CTGCCACGACATGTTTGATTTTCTTCATCTCACAGGAGGGGGCTATGCAAAGATCTGCAAACCCCTCCAT
GAACTGATCATGCAGTTGCTGGAGGAAACACCGGAGGAGAAGCAGACCACCATTGCTTGA

Translation (229 aa):
MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALN
FGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLL
PRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDIDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLH
ELIMQLLEETPEEKQTTIA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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