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Report for CCDS25514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25514.1 Public Mus musculus 11 Hexim2 23 108 98 CCDS HistoryNCBI Gene:71059Re-query CCDS DB by CCDS ID:25514.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062530.4 ENSMUSP00000053678.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062530.4Link to Ensembl Protein Viewer:ENSMUSP00000053678.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062530Re-query CCDS DB by Protein ID:ENSMUSP00000053678
Original member Current member EBI ENSMUST00000107037.7 ENSMUSP00000102652.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107037.7Link to Ensembl Protein Viewer:ENSMUSP00000102652.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107037Re-query CCDS DB by Protein ID:ENSMUSP00000102652
Original member Current member NCBI NM_001130515.1 NP_001123987.1 Accepted alive Link to Nucleotide Sequence:NM_001130515.1Link to Protein Sequence:NP_001123987.1Re-query CCDS DB by Nucleotide ID:NM_001130515Re-query CCDS DB by Protein ID:NP_001123987Link to BLAST:NP_001123987.1
Original member Current member NCBI NM_001130516.1 NP_001123988.1 Accepted alive Link to Nucleotide Sequence:NM_001130516.1Link to Protein Sequence:NP_001123988.1Re-query CCDS DB by Nucleotide ID:NM_001130516Re-query CCDS DB by Protein ID:NP_001123988Link to BLAST:NP_001123988.1
Original member Current member NCBI NM_027658.2 NP_081934.1 Accepted alive Link to Nucleotide Sequence:NM_027658.2Link to Protein Sequence:NP_081934.1Re-query CCDS DB by Nucleotide ID:NM_027658Re-query CCDS DB by Protein ID:NP_081934Link to BLAST:NP_081934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123987.1 313 Q3TVI4 313 100% 0 0
NP_001123988.1 313 Q3TVI4 313 100% 0 0
NP_081934.1 313 Q3TVI4 313 100% 0 0

Chromosomal Locations for CCDS 25514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103134079 103134141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103138187 103139065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCCACTGTGAACCATACCAACTGCAACACAGCGTCACCAGCTGCTCTGGAGGAGGCCAAGACTTCCG
GTGGTCTTCGGAGCCCCCAGATAGCCCATGAGCCTCATGACTTCGGTGGTTCCCAGCTTCTGCCATCAGG
ACAGGAGATCCAATCAGAGGATGAAGGGACTGTCCCCGCTGGCGATGGCTCAAGTTGTAACATTAGGGGT
TCTCGAACCCAGAGCCCAGGGGGCTGTTCGGTGGAGGCGGTGCTGGCCCGAAAGAAGCACCGTAGGCGGC
CATCGAAGCGCAAGCGGCACTGGCGGCCCTACTTGGAGCTGAGCTGGGCCGAGAAGCAACAGCGAGATGA
GAGGCAGAGCCAGAGGGCCTCTCGGGTCCGTGAGGAGATGTTCGCCAAAGGTCAGCCCCTGGCGCCCTAC
AACACCACCCAGTTCCTCATGAATGATCGTGACCTGGAGGAGCCTAACCTCGATGTGCTTCACGGGCCCT
CCCACTCTGGCTCCGGTGGGGAGAACGAAGCAGGGGACAGTGATGGGCAAGGCCGAGCCCATGGGGAATT
TCAGCAGAGGGACTTCTCTGAGGCCTATGAGCGGTACCACACTGAGAGCCTTCAGGGCCGCAGCAAGCAG
GAGCTGGTGCGAGACTACCTGGATCTAGAGAGGCGTCTGTCACAGGCTGAGCAGGAAACTCGGAGGCTCC
GGCAGCTGCAGGGTTGCTCCAGCAGGCAACCCTGTCAACAGGTGGAAGAGCTGGCTGCTGAGGTGGAGAG
GCTCAGAACTGAAAACCAGCGGCTGCGTCAGGAGAACGAGATGTGGAACCGAGAGGGCGGCTACTGTGAC
CAGGAGAAACCAGCCTCAGAAGGGACCCCTTGGCCCAAGGTTGAAGCCCCATTTCAGACCCACACAGGCC
AGCTGGGTCATAGGGAGGCAGGTGACAGATGA

Translation (313 aa):
MATVNHTNCNTASPAALEEAKTSGGLRSPQIAHEPHDFGGSQLLPSGQEIQSEDEGTVPAGDGSSCNIRG
SRTQSPGGCSVEAVLARKKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPLAPY
NTTQFLMNDRDLEEPNLDVLHGPSHSGSGGENEAGDSDGQGRAHGEFQQRDFSEAYERYHTESLQGRSKQ
ELVRDYLDLERRLSQAEQETRRLRQLQGCSSRQPCQQVEELAAEVERLRTENQRLRQENEMWNREGGYCD
QEKPASEGTPWPKVEAPFQTHTGQLGHREAGDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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