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Report for CCDS38245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38245.1 Public Mus musculus 2 Spef1 23 108 98 CCDS HistoryNCBI Gene:70997Re-query CCDS DB by CCDS ID:38245.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028801.7 ENSMUSP00000028801.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028801.7Link to Ensembl Protein Viewer:ENSMUSP00000028801.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028801Re-query CCDS DB by Protein ID:ENSMUSP00000028801
Original member Current member EBI ENSMUST00000110218.8 ENSMUSP00000105847.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110218.8Link to Ensembl Protein Viewer:ENSMUSP00000105847.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110218Re-query CCDS DB by Protein ID:ENSMUSP00000105847
Original member Current member NCBI NM_027641.2 NP_081917.1 Accepted alive Link to Nucleotide Sequence:NM_027641.2Link to Protein Sequence:NP_081917.1Re-query CCDS DB by Nucleotide ID:NM_027641Re-query CCDS DB by Protein ID:NP_081917Link to BLAST:NP_081917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081917.1 234 Q99JL1 234 100% 0 0

Chromosomal Locations for CCDS 38245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131171683 131171790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131171902 131172025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131172204 131172258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131172370 131172409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131172623 131172779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131173196 131173307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131174565 131174673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGAAAGCAGCGTGGATGAGGAGGCTCTGCACCAGCTGTACCTCTGGGTAGACAATATCCCTCTGTCCA
GACCCAAGAGAAACCTCTCCCGGGACTTCAGTGACGGAGTCCTGGTTGCAGAGCTTATCAAGTTTTACTT
CCCCAAGATGGTGGAGATGCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTCAGCAACTGGGGT
CACCTGAACAGAAAGGTGCTGAACAAGCTGAACTTCTCGGTCCCTGACGATGTGATGCGGAAGATTGCGC
AGTGTTCTCCGGGAGTAGTGGAGCTAGTGCTCATTCCACTGAGGCAGCGCCTGGAGGAGCGGCAGAGGCG
CCAGAAGCTGGGTGTTGGCTCCTTACAGGAGCTGGCTCCTCAGGATAGCAGTGGCTACATGGATATGGGT
TTGCCCCAGAAGGTTCGAGGAGAGGGTGCCCCAGCCTTGGGAGAGCAGCTCAGAGAGGGCCGTCCGTTGG
CTTCCCGACCCCCTGGGTATAACCAGGCGCTGCAGGGTGATCCGAGCTTCGTCCTCCAGATCGCTGAAAA
GGAGCAGGAGCTGTTGGCCTCTCAAGAGACAGTACAGGTCCTTCAGATGAAGGTGAAGCGTCTGGAACAT
CTGCTCCAACTTAAGAACGTGCGCATCGATGATCTCTCCCGGCGGCTCCAGCAGGCCGAGCGCAAGCAGC
GGTGA

Translation (234 aa):
MESSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAELIKFYFPKMVEMHNYVPANSLQQKLSNWG
HLNRKVLNKLNFSVPDDVMRKIAQCSPGVVELVLIPLRQRLEERQRRQKLGVGSLQELAPQDSSGYMDMG
LPQKVRGEGAPALGEQLREGRPLASRPPGYNQALQGDPSFVLQIAEKEQELLASQETVQVLQMKVKRLEH
LLQLKNVRIDDLSRRLQQAERKQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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