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Report for CCDS48614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48614.1 Public Mus musculus 10 Tektl1 23 108 98 CCDS HistoryNCBI Gene:70976Re-query CCDS DB by CCDS ID:48614.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105383.3 ENSMUSP00000101022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105383.3Link to Ensembl Protein Viewer:ENSMUSP00000101022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105383Re-query CCDS DB by Protein ID:ENSMUSP00000101022
Original member Current member NCBI NM_027630.1 NP_081906.1 Accepted alive Link to Nucleotide Sequence:NM_027630.1Link to Protein Sequence:NP_081906.1Re-query CCDS DB by Nucleotide ID:NM_027630Re-query CCDS DB by Protein ID:NP_081906Link to BLAST:NP_081906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081906.1 499 Q9D4K7 499 100% 0 0

Chromosomal Locations for CCDS 48614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78747049 78747297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78748251 78748364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78748443 78748538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78748646 78748812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78749127 78749325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78750541 78750645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78752405 78752974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGCCTGTGTTGCTCCCTTCCACCGACCCGGGCCAGGACTCGCGCGTTGGGGCTCCAGAATGGCGCCAGG
CGGCCAAGGCCACGTCTCGCAAGGCACACCTTCTGACCGATCGCTGTGGGCAGGAGGCGGTGACCATGTG
GCAGCCCAAGGACAGTGTACTGGACCCGAACGTGGCACACCACCTGGGCCGCGCCGCCTACATGGAACCC
TGGCGCTTTCGGGTAGAGATGCTCAAAGGGGGCGGCACCCTGGAAAAGCCACCGCCCGGAGAAGGCGTCA
CCCTATGGAAAGGGAAGATGAAGCCCCCGGCCTGGTACGCGCGCCTACCGCTGCCTATGCACCGCGACGC
GCGTGCCCAGCAAACCGCCGAGGTGGTGCACGCGCACGCACGCGGGGCGCGCCTCACCGCCGCCCGCCTG
GGCCGCGCACAGCACCAGATCAATGGGCAGCTGCGGCTGCTGCTGCGCCAGCGCGAGGCCACTGACCGCA
GGCTCAGCGAGGTGCGCAAGGGCCTGCTCATCAATCAGCAGAGCGTCAAGTTGCGGGGCTACCGACCTAA
GTGTGAGAAGATCCCAGACAAGGCTGACAGCTTGCTTGTCTGGGAGAAAAAGGAACTGAAGTCCATGAAG
AGAAAAATGGAGAAGGACATGGAAATATCGGAGGACTTGCTCAAGGCTCTGGCCTCCTGCAGGGACACTC
TGGACTTCTACTGTCAGGAAAGGCTGCAAGCTGTGGAACTCATGAACCAGCCACTGGACAAAGTTCTGGA
GCAGGCTGGCCGCCACTCGTGGGTAGACATCACCCGACCCCCAACTCCTCGAACTCAGGGCTTGAAAACG
CCTCCTCCTGACCCCATTGGCACATATACCCCAGCGTGTGCTAAGGCCTTGTTTGAAGCCAAGCGCTTGT
TGATGGAGTCCAAAGACATCTTAACAGAGATGGCAAAGAATGAGGTGGACATTCAAAATCAACAACAGGA
GATAAGCAACCGTGTATGCTCCTCGCTGGCACAGAAGATGCGTGAGACCTTGGAGTTGAAGGAAAGAATG
ACCATGACTTTGGGGCTAATGAGGGGGACTATCCACCGGTGCATGAAATTCAATCAAGAGATGTACGTCA
CGCGGGGCATCATCAAGGGTCCTCTGTTGAAAAGGAACCTGGAGGCGCGAGAGAAACTGAACAGACCCTT
GGTTCGCATGTATCAGAGACACGTGGGCACCCAGCTCCCCGAGGCTACTCGCCTTGCCCAGGGTACTGAC
CTGCTGACCCGCCACAACTTGCACATGGAAAAGAATTTAAAAGAGCTCCGTACAACACACGATAACCTCG
CCTGGGGCCTCAACTGCAAAAAGATAGGGCACGATGTGGACTACGATGTGGTGCGTCTGCGCCTACGCCA
GCGCCACCCGCACGTGTGCTATGAGCAAGCGCAGCGCCTGGTCAACGACTGGGACCCTCCCACACCAGCG
CGCAGCCAAACCAATACCGCCTCCAAGTGA

Translation (499 aa):
MPVLLPSTDPGQDSRVGAPEWRQAAKATSRKAHLLTDRCGQEAVTMWQPKDSVLDPNVAHHLGRAAYMEP
WRFRVEMLKGGGTLEKPPPGEGVTLWKGKMKPPAWYARLPLPMHRDARAQQTAEVVHAHARGARLTAARL
GRAQHQINGQLRLLLRQREATDRRLSEVRKGLLINQQSVKLRGYRPKCEKIPDKADSLLVWEKKELKSMK
RKMEKDMEISEDLLKALASCRDTLDFYCQERLQAVELMNQPLDKVLEQAGRHSWVDITRPPTPRTQGLKT
PPPDPIGTYTPACAKALFEAKRLLMESKDILTEMAKNEVDIQNQQQEISNRVCSSLAQKMRETLELKERM
TMTLGLMRGTIHRCMKFNQEMYVTRGIIKGPLLKRNLEAREKLNRPLVRMYQRHVGTQLPEATRLAQGTD
LLTRHNLHMEKNLKELRTTHDNLAWGLNCKKIGHDVDYDVVRLRLRQRHPHVCYEQAQRLVNDWDPPTPA
RSQTNTASK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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