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Report for CCDS3210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3210.1 Public Homo sapiens 3 SEC62 24 110 108 CCDS HistoryNCBI Gene:7095Re-query CCDS DB by CCDS ID:3210.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3210.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337002.9 ENSP00000337688.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337002.9Link to Ensembl Protein Viewer:ENSP00000337688.4Re-query CCDS DB by Nucleotide ID:ENST00000337002Re-query CCDS DB by Protein ID:ENSP00000337688
Original member Current member EBI ENST00000480708.5 ENSP00000420331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000480708.5Link to Ensembl Protein Viewer:ENSP00000420331.1Re-query CCDS DB by Nucleotide ID:ENST00000480708Re-query CCDS DB by Protein ID:ENSP00000420331
Original member Current member NCBI NM_003262.4 NP_003253.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003262.4Link to Protein Sequence:NP_003253.1Re-query CCDS DB by Nucleotide ID:NM_003262Re-query CCDS DB by Protein ID:NP_003253Link to BLAST:NP_003253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003253.1 399 Q99442 399 100% 0 0

Chromosomal Locations for CCDS 3210.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 169966823 169966858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169975608 169975716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169976946 169977051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169982707 169982911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169983161 169983253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169985805 169985865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169988240 169988359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169992594 169993063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCGGAACGCAGGAGACACAAGAAGCGGATCCAGGAAGTTGGTGAACCATCTAAAGAAGAGAAGGCTG
TGGCCAAGTATCTTCGATTCAACTGTCCAACAAAGTCCACCAATATGATGGGTCACCGGGTTGATTATTT
TATTGCTTCAAAAGCAGTGGACTGTCTTTTGGATTCAAAGTGGGCAAAGGCCAAGAAAGGAGAGGAAGCT
TTATTTACAACCAGGGAGTCTGTGGTTGACTACTGCAACAGGCTTTTAAAGAAGCAGTTTTTTCACCGAG
CCCTAAAAGTAATGAAAATGAAATATGATAAAGACATAAAGAAAGAAAAAGATAAAGGAAAAGCTGAAAG
TGGAAAAGAAGAAGATAAAAAGAGCAAGAAAGAAAATATAAAGGATGAGAAGACAAAAAAAGAAAAAGAG
AAAAAAAAAGATGGTGAAAAGGAAGAATCCAAAAAGGAGGAAACTCCAGGAACTCCTAAAAAGAAGGAAA
CTAAGAAAAAATTCAAACTTGAGCCACATGATGATCAGGTTTTTCTGGATGGAAATGAGGTGTATGTATG
GATCTATGACCCAGTTCACTTTAAAACATTTGTCATGGGATTAATTCTTGTGATTGCAGTAATAGCGGCC
ACCCTCTTCCCCCTTTGGCCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTGGGTGCAGGCTGTT
TTGTAGCCAGTATTCTTCTCCTTGCTGTTGCTCGATGCATTCTATTTCTCATCATTTGGCTCATAACTGG
AGGAAGGCACCACTTTTGGTTCTTGCCAAATCTGACTGCTGATGTGGGCTTCATTGACTCCTTCAGGCCT
CTGTACACACATGAATACAAAGGACCAAAAGCAGACTTAAAGAAAGATGAGAAGTCTGAAACCAAAAAGC
AACAGAAGTCCGACAGTGAGGAAAAGTCAGACAGTGAGAAAAAGGAAGATGAGGAGGGGAAAGTAGGACC
AGGAAATCATGGAACAGAAGGCTCGGGGGGAGAACGGCATTCAGACACGGACAGTGACAGGAGGGAAGAT
GATCGATCCCAGCACAGTAGTGGAAATGGAAATGATTTTGAAATGATAACAAAAGAGGAACTGGAACAGC
AAACAGATGGGGATTGTGAAGAGGATGAGGAAGAGGAAAATGATGGAGAAACACCTAAATCTTCACATGA
AAAATCATAA

Translation (399 aa):
MAERRRHKKRIQEVGEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVDCLLDSKWAKAKKGEEA
LFTTRESVVDYCNRLLKKQFFHRALKVMKMKYDKDIKKEKDKGKAESGKEEDKKSKKENIKDEKTKKEKE
KKKDGEKEESKKEETPGTPKKKETKKKFKLEPHDDQVFLDGNEVYVWIYDPVHFKTFVMGLILVIAVIAA
TLFPLWPAEMRVGVYYLSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTADVGFIDSFRP
LYTHEYKGPKADLKKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGNHGTEGSGGERHSDTDSDRRED
DRSQHSSGNGNDFEMITKEELEQQTDGDCEEDEEEENDGETPKSSHEKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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