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Report for CCDS15716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15716.1 Public Mus musculus 2 4921504E06Rik 23 108 98 CCDS HistoryNCBI Gene:70909Re-query CCDS DB by CCDS ID:15716.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15716.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062060.4 ENSMUSP00000058720.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062060.4Link to Ensembl Protein Viewer:ENSMUSP00000058720.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062060Re-query CCDS DB by Protein ID:ENSMUSP00000058720
Original member Current member NCBI NM_027600.4 NP_081876.2 Accepted alive Link to Nucleotide Sequence:NM_027600.4Link to Protein Sequence:NP_081876.2Re-query CCDS DB by Nucleotide ID:NM_027600Re-query CCDS DB by Protein ID:NP_081876Link to BLAST:NP_081876.2

Chromosomal Locations for CCDS 15716.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 19463128 19463186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19475559 19475607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19475692 19475772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19477786 19477873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19480374 19480439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19480515 19480594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19480921 19480983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19493984 19494232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19495057 19495128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19511782 19511847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19516255 19516313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19517536 19517683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19523966 19524121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19533762 19533836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19540269 19540412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19542375 19542495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19553774 19553880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCGGAGGCTGAGACTGAGACTGAAGAATGGACGAAGACACGTGGATGCAGGAAGATTCTCCAGACCC
TCGAGGGGGCTATTGAGCAATTCAAATTCCATTCCAGGCTTGCTATTTCAGATGATTTAAAGGTTGGCTT
CTTTACTTCAGACCATGCTACTCAGACAGACTGCAGTGAAGTTTTTCCATTGAAAGATTTGACTCAATCC
ACGGAAAAGTTAATGCGTATTATTACATCACTTCACGTGGATTTTGGATTCCTCAAAGATTTGGTTCAAC
TGAAATTCGAGGAACGACTTAAAGAGGAGTCTTGGAAAATTGTTGGTATGCTCTGTGACAAAATGTTAGA
GATGAAGAGGCATTACCAGCAGGGAGAAGATATCATGAGAAAAAGCTTTCAACAGCAGCTATGTGATGCC
ATAGCTATTATCAAAGGAATGTACCAGAAATACTTCGAAATAGAAGATGAAAAAGCTGCCCTGCAAGATG
CAGATGATGTCAAATTGAATGTTTTGAGGAGAAAACTGAAAGAGAAAGAAGAAATTATTAAGAATTTAAA
GAATGAATTAGAACTATATGAAGAGTTTGGATTTAAAAAAGTTGACTCTTTTGCCAAGGAGTCCAGCTCT
CCAAAACCAATCTCAGAAAAGGAACTTCTAGACTGCAGGGCAGAGAATGAAAGGTTAATACAAATTATCG
CAGAGCTTGAGGAAGAATCACGGACGGCCATAAATGAAAACGCAATGCTAGAGGATGAAGTTATGTATCT
GAAAGAGATTTCAGACCAGGATCAGCGAACTATTCAAAAGTTAATGGATAGTAGAGAGAGACTAAGATAT
GAGCTGGATTGTGAAAAACTAGCCATTCAAGACATGATCAGCAGACAGAAAGACGACATTGAAATTAAAA
GAAAGTTTGCCAGTATAAGCACCTATCATGGAGGCAAGAGAGGAACAATGAGCAAGGGAAGAGAAGTTTC
TATCTATGCAACACATCAAACCAGAGAGGGGACACACTTTCTGCGGCCTCCTTTAGCGTCCTTCAGTGTA
TCTCCAAAGATGAAAAGGAAGTTCTCATCGAAGAAATATATTAATACTGCAGCTGCTCCTGCTACTACTG
CCACTGAGACAACAGTCACTGTTCCTGCCACTGCTGAAATTTTTACACATCTCCTTGAAAAGCCTTCAGA
GAAGCATGTTACATTTCTACTACCTAGCATGGTGCCTGAAGAATTATTTCTGAAATATCAGTTGGTTAAG
GAAGAAGAAAAAAAAGTTTTGGAGAATCAAGTGGAGATTTTAAAAAATGCATTGGAGGATGAGGGAAAGA
GATTGGAAAGGTTTAAAAAAGATGCTGATCAGGCCAACAAAAACTGGGAGAAGAAATTTCTTATCCTCAA
GAACAGCTTTCATGTCCTAAAGAATGAGATGTTCACTAGACAAACACTTTACCGGCAGTATGCAATGACT
GGTGACACCTCCTTCAATTATATTAAAGTTAAGCCCTTGTATGTGCACTCCACTGTGAACATGGCAGAGC
CATCCTCTCCTCCAAATGTTCCTCATCCACCCATGGTGGACCCCAGCAATGAGAACACACGCAGTGATCA
GGTGTTTCCAGGAGTCACCTCGGATTCTAGAGACAACACGGACTCCTGGAACAGAGAGGACCATTTTCGG
TGA

Translation (560 aa):
MAEAETETEEWTKTRGCRKILQTLEGAIEQFKFHSRLAISDDLKVGFFTSDHATQTDCSEVFPLKDLTQS
TEKLMRIITSLHVDFGFLKDLVQLKFEERLKEESWKIVGMLCDKMLEMKRHYQQGEDIMRKSFQQQLCDA
IAIIKGMYQKYFEIEDEKAALQDADDVKLNVLRRKLKEKEEIIKNLKNELELYEEFGFKKVDSFAKESSS
PKPISEKELLDCRAENERLIQIIAELEEESRTAINENAMLEDEVMYLKEISDQDQRTIQKLMDSRERLRY
ELDCEKLAIQDMISRQKDDIEIKRKFASISTYHGGKRGTMSKGREVSIYATHQTREGTHFLRPPLASFSV
SPKMKRKFSSKKYINTAAAPATTATETTVTVPATAEIFTHLLEKPSEKHVTFLLPSMVPEELFLKYQLVK
EEEKKVLENQVEILKNALEDEGKRLERFKKDADQANKNWEKKFLILKNSFHVLKNEMFTRQTLYRQYAMT
GDTSFNYIKVKPLYVHSTVNMAEPSSPPNVPHPPMVDPSNENTRSDQVFPGVTSDSRDNTDSWNREDHFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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