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Report for CCDS41396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41396.1 Public Homo sapiens 1 TCHH 24 110 108 CCDS HistoryNCBI Gene:7062Re-query CCDS DB by CCDS ID:41396.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614923.2 ENSP00000480484.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614923.2Link to Ensembl Protein Viewer:ENSP00000480484.1Re-query CCDS DB by Nucleotide ID:ENST00000614923Re-query CCDS DB by Protein ID:ENSP00000480484
Original member Current member NCBI NM_007113.4 NP_009044.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007113.4Link to Protein Sequence:NP_009044.2Re-query CCDS DB by Nucleotide ID:NM_007113Re-query CCDS DB by Protein ID:NP_009044Link to BLAST:NP_009044.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009044.2 1943 Q07283 1943 100% 0 0

Chromosomal Locations for CCDS 41396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152107385 152113078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152113943 152114080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5832 nt):
ATGTCTCCACTTCTGAGAAGCATCTGTGACATCACTGAAATTTTCAATCAGTATGTCTCTCATGATTGTG
ATGGAGCAGCATTAACTAAGAAAGACCTGAAGAACCTCCTTGAAAGGGAATTTGGAGCTGTGCTTCGGAG
ACCACATGACCCTAAGACGGTAGATCTGATCCTGGAACTTCTGGATCTTGACAGTAATGGGCGTGTCGAT
TTCAACGAATTCCTCCTATTTATTTTCAAAGTGGCTCAAGCTTGTTACTATGCTCTCGGCCAGGCCACGG
GACTGGATGAGGAGAAGCGAGCCCGGTGTGACGGAAAGGAGAGCCTGTTACAAGATCGCAGGCAAGAAGA
AGACCAAAGGAGATTCGAGCCCCGGGACAGACAACTGGAAGAAGAACCTGGGCAACGACGCAGGCAGAAG
AGGCAGGAACAGGAGAGGGAGCTAGCTGAGGGAGAGGAGCAAAGTGAGAAACAAGAGCGACTTGAACAGC
GCGACAGGCAGCGCCGCGACGAGGAGCTGTGGCGGCAAAGGCAAGAATGGCAAGAACGGGAAGAGCGCCG
TGCAGAGGAAGAGCAGCTGCAGAGTTGCAAAGGTCACGAAACTGAGGAGTTTCCAGACGAAGAGCAACTG
CGAAGGCGGGAGCTGCTGGAGCTGAGGAGGAAGGGCCGCGAGGAGAAACAGCAGCAAAGGCGAGAGCGGC
AAGACAGAGTGTTCCAGGAGGAAGAAGAGAAAGAGTGGAGGAAGCGCGAGACAGTGCTCCGGAAGGAAGA
AGAGAAGTTGCAGGAAGAGGAGCCGCAGCGGCAAAGAGAGCTCCAGGAGGAAGAAGAGCAGCTACGGAAG
CTGGAGCGGCAAGAGCTGAGGAGGGAGCGCCAGGAGGAAGAGCAGCAGCAGCAAAGGCTGAGGCGCGAGC
AGCAACTAAGGCGCAAGCAGGAGGAGGAGAGGCGCGAGCAGCAGGAGGAGAGGCGCGAGCAGCAGGAGAG
GCGCGAGCAGCAGGAGGAGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAGCAG
CTGAGGCGCGAGCAGGAGGAGGAGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGGAGGAGGAGAGGCGCG
AGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGGCG
CGAGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGGCGCGAGCAGCAGCTGAGG
CGCGAGCAGCAGCTGAGGCGCGAGCAGGAGGAGGAGAGGCACGAGCAGAAGCACGAGCAGGAGAGGCGCG
AGCAGCGGCTGAAGCGCGAGCAGGAGGAGAGGCGCGATTGGCTGAAGCGCGAGGAGGAGACGGAGAGGCA
CGAGCAGGAGAGGCGCAAGCAGCAGCTGAAGCGCGACCAGGAGGAGGAGAGGCGCGAACGTTGGCTGAAG
CTCGAGGAGGAGGAGAGGCGCGAGCAGCAGGAGAGGCGCGAGCAGCAACTAAGGCGGGAGCAAGAGGAGA
GGCGCGAGCAGCGGCTGAAGCGCCAGGAGGAGGAAGAGAGGCTCCAGCAGCGGTTGAGGAGCGAGCAACA
ACTAAGACGCGAGCAGGAGGAGAGGCGCGAGCAGCTGCTGAAGCGCGAGGAGGAGAAGAGGCTCGAGCAG
GAGAGGCGAGAGCAGCGGCTGAAGCGCGAGCAGGAGGAGAGGCGCGATCAGCTGCTGAAGCGCGAGGAGG
AGAGGCGCCAGCAGCGGCTGAAGCGCGAGCAGGAAGAGAGGCTCGAGCAGCGACTGAAGCGCGAGGAGGT
GGAGAGACTCGAGCAGGAGGAGAGGCGCGAGCAGCGGCTGAAGCGCGAGGAGCCGGAGGAAGAGAGGCGC
CAGCAGCTGCTGAAGAGCGAGGAGCAGGAGGAGAGGCGCCAGCAGCAACTAAGGCGCGAGCAGCAGGAAA
GGCGCGAGCAGCGGCTGAAGCGCGAGGAGGAGGAAGAGAGGCTCGAGCAGCGGCTGAAGCGCGAGCATGA
GGAAGAGAGGCGCGAGCAGGAGCTAGCTGAGGAGGAGCAGGAACAGGCCCGGGAGCGGATTAAGAGCCGC
ATCCCGAAGTGGCAGTGGCAGCTAGAAAGCGAGGCCGACGCACGGCAAAGCAAAGTCTACTCGAGGCCCC
GCAAGCAGGAAGGGCAGAGGCGCCGCCAAGAGCAGGAGGAAAAGAGGCGGCGCCGGGAGAGTGAGCTGCA
ATGGCAGGAGGAGGAACGGGCTCACCGGCAGCAGCAGGAAGAGGAGCAGCGCCGGGACTTCACATGGCAG
TGGCAGGCGGAGGAAAAGAGCGAGAGGGGCCGTCAGAGGCTGTCGGCCAGGCCCCCATTGCGGGAGCAGC
GGGAGAGGCAGCTGAGGGCCGAGGAGCGCCAGCAGCGGGAACAACGGTTTCTCCCGGAGGAGGAGGAGAA
GGAGCAGCGGCGCCGCCAGCGACGCGAGAGGGAGAAAGAGCTGCAGTTCCTGGAGGAAGAGGAGCAGCTC
CAGCGGCGGGAGCGTGCCCAACAGCTCCAGGAGGAGGAGGACGGCCTCCAGGAGGATCAGGAGAGGAGGC
GAAGCCAGGAGCAGCGCCGCGACCAAAAATGGAGGTGGCAACTAGAAGAAGAAAGGAAGAGACGCCGCCA
CACGCTGTACGCCAAGCCAGCCCTACAAGAGCAGCTGAGGAAGGAACAGCAGCTGCTGCAGGAGGAGGAG
GAGGAGCTACAGAGAGAGGAGCGCGAGAAGAGAAGGCGCCAAGAACAGGAGAGACAATACCGCGAGGAAG
AGCAGCTGCAGCAGGAGGAAGAGCAGCTGCTGAGAGAGGAACGGGAGAAAAGAAGACGCCAGGAGCGGGA
AAGGCAATATCGGAAGGATAAGAAGCTGCAGCAGAAGGAAGAGCAGCTGCTGGGAGAGGAACCGGAGAAG
AGAAGGCGCCAGGAGCGGGAGAAAAAATACCGCGAGGAAGAGGAGTTGCAGCAGGAGGAAGAGCAGCTGC
TGAGAGAGGAACGGGAGAAGAGAAGGCGCCAGGAGTGGGAGAGGCAGTACCGCAAAAAAGACGAGCTGCA
GCAGGAAGAAGAGCAGCTGCTGAGAGAGGAACGGGAGAAAAGAAGACTCCAGGAGCGGGAGAGGCAATAT
CGGGAGGAAGAGGAGCTGCAGCAGGAGGAAGAGCAGCTGCTGGGAGAGGAACGGGAGACGAGAAGGCGCC
AGGAGCTGGAGAGGCAATATCGGAAGGAAGAGGAGCTGCAGCAGGAGGAAGAGCAGCTGCTGAGAGAGGA
ACCGGAGAAGAGAAGGCGCCAGGAGCGGGAGAGGCAATGTCGGGAGGAAGAGGAGCTGCAGCAGGAGGAA
GAGCAGCTGCTGAGAGAGGAACGGGAGAAGAGAAGGCGCCAGGAGCTGGAGAGGCAATATCGGGAGGAAG
AGGAGGTGCAGCAGGAGGAAGAGCAGCTGCTGAGAGAGGAACCGGAGAAGAGAAGGCGCCAGGAGCTGGA
GAGGCAATACCGCGAGGAAGAGGAGCTGCAGCAGGAGGAAGAGCAGCTGCTGAGAGAGGAACAGGAGAAA
AGGCGCCAGGAGCGGGAGAGGCAGTATCGGGAGGAGGAAGAGCTTCAGCGCCAGAAAAGGAAGCAGCGAT
ACCGGGATGAGGATCAGCGCAGTGATCTGAAATGGCAGTGGGAACCAGAAAAAGAAAATGCAGTTCGTGA
TAACAAGGTTTACTGCAAAGGCAGAGAGAATGAACAGTTCCGGCAGTTGGAAGATTCCCAGCTGCGCGAC
AGACAATCCCAGCAAGATCTGCAGCACCTGCTGGGTGAACAGCAAGAGCGAGATCGTGAGCAAGAGAGGA
GGCGCTGGCAGCAGCGCGACAGGCATTTCCCAGAGGAAGAACAGCTGGAGCGAGAAGAGCAAAAGGAAGC
CAAAAGGCGCGACAGGAAGTCCCAAGAGGAAAAGCAGTTGCTGAGAGAGGAAAGAGAAGAGAAGAGACGC
CGTCAAGAGACAGACAGAAAATTCCGCGAGGAGGAACAGCTGCTCCAGGAAAGGGAGGAACAGCCGCTGC
GCCGCCAAGAGCGTGACAGAAAATTCCGCGAAGAGGAACTGCGCCATCAGGAACAAGGGAGAAAATTCCT
CGAGGAGGAACAGCGGCTGCGCCGCCAGGAACGGGAGAGAAAATTCCTTAAGGAGGAACAGCAGCTGCGC
TGCCAGGAGCGCGAGCAACAGCTGCGTCAGGACCGCGACAGAAAATTCCGCGAGGAGGAACAGCAGCTGA
GCCGCCAAGAGCGTGACAGAAAATTCCGTGAAGAGGAACAGCAGGTGCGCCGCCAGGAACGAGAGAGAAA
ATTCCTGGAGGAGGAACAGCAGCTGCGCCAGGAGCGTCACAGAAAATTCCGCGAAGAGGAACAGCTGCTC
CAGGAAAGGGAAGAACAGCAGCTGCACCGCCAAGAGCGTGACAGAAAATTCCTGGAGGAGGAACAACAGC
TGCGCCGCCAAGAGCGTGACAGAAAATTCCGCGAACAGGAACTGCGCAGTCAGGAACCAGAGAGAAAATT
CCTCGAGGAGGAACAGCAGCTGCACCGCCAGCAACGGCAGAGAAAATTCCTCCAGGAGGAACAGCAGCTG
CGCCGCCAGGAGCGCGGGCAACAGCGGCGTCAGGACCGTGACAGAAAATTCCGCGAGGAGGAACAGCTGC
GCCAGGAGAGGGAGGAACAGCAGCTGAGCCGCCAAGAGCGTGACAGAAAATTCCGTTTAGAGGAACAGAA
AGTGCGCCGCCAGGAACAAGAGAGAAAATTCATGGAGGACGAACAGCAGCTGCGCCGCCAGGAGGGCCAA
CAACAGCTGCGCCAGGAGCGCGACAGAAAATTCCGCGAAGACGAACAGCTGCTCCAGGAAAGGGAAGAAC
AGCAGCTGCACCGCCAAGAGCGTGACAGAAAATTCCTCGAGGAGGAACCGCAGCTGCGCCGCCAGGAGCG
CGAACAACAGCTGCGTCACGACCGCGACAGAAAATTCCGTGAAGAGGAACAGCTGCTCCAGGAAGGGGAG
GAACAGCAGCTGCGCCGCCAAGAGCGTGACAGAAAATTCCGCGAAGAGGAACAGCAGCTCCGCCGTCAGG
AACGAGAGAGAAAATTCCTCCAGGAGGAACAGCAGCTGCGCCGCCAGGAACTGGAGAGAAAATTCCGTGA
GGAGGAACAGCTGCGCCAAGAAACGGAGCAAGAGCAGCTGCGCCGCCAAGAACGCTACAGAAAAATCCTA
GAGGAAGAGCAGCTCCGTCCGGAAAGGGAAGAACAGCAGCTGCGCCGCCAGGAGCGCGACAGAAAATTCC
GCGAGGAGGAACAGCTCCGCCAGGAGAGGGAGGAACAGCAGCTGCGCAGCCAAGAGTCTGACAGAAAATT
CCGCGAGGAGGAACAGCTACGCCAGGAGAGGGAAGAACAGCAGCTGCGCCCCCAACAGCGTGACGGAAAG
TATCGCTGGGAAGAAGAGCAGCTCCAACTTGAGGAACAAGAGCAGAGGCTGCGGCAGGAGCGAGACCGGC
AGTACCGGGCGGAGGAGCAGTTTGCCACGCAGGAGAAGAGTCGTCGTGAGGAACAAGAACTATGGCAAGA
AGAGGAGCAGAAACGTCGCCAGGAACGGGAAAGGAAATTACGGGAAGAACACATCCGCCGCCAGCAGAAG
GAGGAACAGAGGCACCGCCAAGTCGGGGAGATAAAATCCCAAGAAGGGAAGGGCCATGGGCGGCTTCTGG
AGCCCGGCACTCATCAGTTTGCCAGTGTCCCAGTGCGCTCCAGCCCTCTCTATGAGTACATCCAAGAGCA
GAGATCTCAATACCGCCCTTAA

Translation (1943 aa):
MSPLLRSICDITEIFNQYVSHDCDGAALTKKDLKNLLEREFGAVLRRPHDPKTVDLILELLDLDSNGRVD
FNEFLLFIFKVAQACYYALGQATGLDEEKRARCDGKESLLQDRRQEEDQRRFEPRDRQLEEEPGQRRRQK
RQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREERRAEEEQLQSCKGHETEEFPDEEQL
RRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRK
LERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRREQEERREQQ
LRREQEEERREQQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLR
REQQLRREQEEERHEQKHEQERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLK
LEEEERREQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRLEQ
ERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREEPEEERR
QQLLKSEEQEERRQQQLRREQQERREQRLKREEEEERLEQRLKREHEEERREQELAEEEQEQARERIKSR
IPKWQWQLESEADARQSKVYSRPRKQEGQRRRQEQEEKRRRRESELQWQEEERAHRQQQEEEQRRDFTWQ
WQAEEKSERGRQRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRRRQRREREKELQFLEEEEQL
QRRERAQQLQEEEDGLQEDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEEE
EELQREEREKRRRQEQERQYREEEQLQQEEEQLLREEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEK
RRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQY
REEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEE
EQLLREEREKRRRQELERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEEEQLLREEQEK
RRQERERQYREEEELQRQKRKQRYRDEDQRSDLKWQWEPEKENAVRDNKVYCKGRENEQFRQLEDSQLRD
RQSQQDLQHLLGEQQERDREQERRRWQQRDRHFPEEEQLEREEQKEAKRRDRKSQEEKQLLREEREEKRR
RQETDRKFREEEQLLQEREEQPLRRQERDRKFREEELRHQEQGRKFLEEEQRLRRQERERKFLKEEQQLR
CQEREQQLRQDRDRKFREEEQQLSRQERDRKFREEEQQVRRQERERKFLEEEQQLRQERHRKFREEEQLL
QEREEQQLHRQERDRKFLEEEQQLRRQERDRKFREQELRSQEPERKFLEEEQQLHRQQRQRKFLQEEQQL
RRQERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQERKFMEDEQQLRRQEGQ
QQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFLEEEPQLRRQEREQQLRHDRDRKFREEEQLLQEGE
EQQLRRQERDRKFREEEQQLRRQERERKFLQEEQQLRRQELERKFREEEQLRQETEQEQLRRQERYRKIL
EEEQLRPEREEQQLRRQERDRKFREEEQLRQEREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGK
YRWEEEQLQLEEQEQRLRQERDRQYRAEEQFATQEKSRREEQELWQEEEQKRRQERERKLREEHIRRQQK
EEQRHRQVGEIKSQEGKGHGRLLEPGTHQFASVPVRSSPLYEYIQEQRSQYRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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