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Report for CCDS15297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15297.1 Public Mus musculus 1 Zc3h11a 23 108 98 CCDS HistoryNCBI Gene:70579Re-query CCDS DB by CCDS ID:15297.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027736.12 ENSMUSP00000027736.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027736.12Link to Ensembl Protein Viewer:ENSMUSP00000027736.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027736Re-query CCDS DB by Protein ID:ENSMUSP00000027736
Original member Current member EBI ENSMUST00000191896.5 ENSMUSP00000141255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191896.5Link to Ensembl Protein Viewer:ENSMUSP00000141255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191896Re-query CCDS DB by Protein ID:ENSMUSP00000141255
Original member Current member NCBI NM_001276767.1 NP_001263696.1 Accepted alive Link to Nucleotide Sequence:NM_001276767.1Link to Protein Sequence:NP_001263696.1Re-query CCDS DB by Nucleotide ID:NM_001276767Re-query CCDS DB by Protein ID:NP_001263696Link to BLAST:NP_001263696.1
Original member Current member NCBI NM_001357228.1 NP_001344157.1 Accepted alive Link to Nucleotide Sequence:NM_001357228.1Link to Protein Sequence:NP_001344157.1Re-query CCDS DB by Nucleotide ID:NM_001357228Re-query CCDS DB by Protein ID:NP_001344157Link to BLAST:NP_001344157.1
Original member Current member NCBI NM_144530.6 NP_653113.4 Accepted alive Link to Nucleotide Sequence:NM_144530.6Link to Protein Sequence:NP_653113.4Re-query CCDS DB by Nucleotide ID:NM_144530Re-query CCDS DB by Protein ID:NP_653113Link to BLAST:NP_653113.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263696.1 792 Q6NZF1 792 100% 0 0
NP_001344157.1 792 Q6NZF1 792 100% 0 0
NP_653113.4 792 Q6NZF1 792 100% 0 0

Chromosomal Locations for CCDS 15297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133621543 133621801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133622117 133622184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133622984 133623150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133624483 133624810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133625848 133625930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133626767 133627270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133633762 133633860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133635997 133636056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133637349 133637459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133638533 133638613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133638833 133638949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133639040 133639243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133640612 133640735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133645727 133645846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133647336 133647389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGCCTAATCAGGGAGAAGACTGCTATTTTTATTTCTATTCTACATGCGCCAAAGGTGACAGCTGCCCAT
TCCGTCACTGTGAAGCTGCACTAGGAAATGAAACTGTTTGCACACTATGGCAAGAAGGTCGTTGTTTTCG
ACAGGTGTGCAGATTTCGTCACATGGAAATTGACAAAAAACGAAGTGAAATTCCTTGTTATTGGGAAAAT
CAGCCAGTGGGATGTCAAAAACTAAACTGCGCTTTCCATCACACCAGAAGCCGCTATGTTGATGGACTCT
TCCTACCTCCAAGCAAAACTGTGTTACCCACTGTGCCTGAGTCACAAGAAGAAGAAGTAAAGACTAGCCA
GCTCACAGTTCAACAGAGCAAATTGTCTGTTCAGTCTAACCCCTCCCCTCAGCTGCGGAGTGTAATGAAA
GTAGAGAGCTCAGAAAACGTTCCCAGCCCCACACATCCGCCTGTTGTAATCAACGCTGCAGATGATGATG
AAGATGACGATGATCAGTTTTCTGAGGAGGGTGATGAAAGCAAGACACCTGCCCTGCAGCCATCTCCTGA
CGTCCATAATGGATTACGAGTGGCTTCTGCCCGCAAACCTGGAGTCAGTTTAAAGCAAGGTGAATGTTTG
AATTTTGGAATAAAGACTCTTGAGGAAATTAAATCAAAGAAAATGAAGGAAAAATCCAAGAAGCAAGGTG
AAGGCTCCTCGGGAGTTTCCAGTGTTTTACAGCAGCCTCAGCCCAATCCAGGCCCTGAGAAGGAGAATGT
TCGGACTGTGGTGAGGATGGTGACTCTATCCAGCAAACCAGAAGAGCCCTTGGTTAGACTGAGTCTTTCT
GAGAGACTGGGGAAACGAAAACTTTCAGTGGGTGGTGATAGTGACCCTCCATTAAAGCGAAGCCTTGCAC
AGAGGCTGGGAAAAAAAGTGGAATCGCCAGAAACTAACATTGATAAAGCACCAAAGAAAGAGCGAGGTCA
TAAAGCTGGGGAGATCCATGTGAAGACACTGGAAGAAATTCTTCTTGAAAGAGCCAGTCAGAAACGTGGA
GAATTGCAAACCAAACTGAAGGCAGAAGAACCTTCAGGAGCCGATGATTCTCCATCAGGGACAAAAAGTT
CTTCTTCAGTGCGGATCAAAACCTTCTCTGAGGTCCTGGCTGAAAAGAAACACCGGCAGCAGGAAATGGA
AAGACAGAAATCCAAAAAGGATACAAGTTGCCTCACGCTAACAGACGACACTGAAATGAAAAAGACAGTG
AGTCTGCCCACTGTTGCTGTTAGCAAAGGACAACCAGAGGAGCCTGCAGGAAGAGCCAGGTCTATGCAGG
AGGTGCATATTAAGACACTAGAGGAAATTAAGCTGGAGAAGGCCCTGAGGGTGCAGCAAAGCTCTGAGAG
TAGTGGCAACTCCCGACCTCAAGCTGAGGCTGCCCCAGGGACAAAGAGGCTGCTCCGCATCACCAAGAGA
GCAGGTGTAAAAGAAGAGAAAAAATGTGGCCTTGAAGACAGTGGTGACCCTCCTCAGAGCAGTGTGACTA
AGATGGAGGCTAATGAGACTTCAGATGAGACCATAAGTGATCCCACAAAACTTGCAGTCAACAGATGTGA
CACTGTCAAAGAGAAACACACACAGAGACTGCAGGAGAGAGGAGCATCACAAAAGGAGAAAGCAGCCTTG
TCATCTGTGCGAGGAGATGAGGCTTCTTCTTATACCCGAGTGGCGGGGAAGCCGGTGCTCACTGCTGTAT
CAGGCGTCACTCGGCATCTGGCAAAACGGCTCCCCGTGGAGTCATCCCAGAAAGGGGAGGTAGAAACCTC
CGGAATCGGGGACTCAATACTGAATGTGAAATGCGCAGCACAGACTTTGGAGAAGAGGAGTAAAGTCAAA
CCCAAAGTAAATGTGAAGCCATCTGTGGTCAAGGTTGTCTCAGCTCCCAAATTGGCTCCCAAACGCAAGG
CTGTGGAGATGCACTCTGCCGTCATCGCAGCCGTGAAGCCGCTCAGCTCCAGCAGTGTCCTGCAGGAAAG
CCCCACCAAGAAAGCAGCTGTGGCTGTTGTCCCACTCCTCTCTGAGGATAAACCCGTCACCATGTCTGAG
ACAGAAAACCCAAAAGACAGTTCTGTGCTGTCTTCAGCCCAAGCTGCTTCGGAACCCTTGCTCCCGGAAG
GCTCTGGCCCTTCCTCATCCCAGACGGCAACAAAACCGCGCCGGCTGAGCTCCGCCTCCACGGGAAAGCC
TCCACTCTCTGTGGAAGATGATTTTGAGAAACTAATATGGGAAATTTCAGGGGGCAAATTGGAAGCTGAG
ATCGACTTGGATCCTGGGAAGGATGAAGATGACCTTCTGCTTGAGCTCTCAGAGATGATTGACAGCTGA

Translation (792 aa):
MPNQGEDCYFYFYSTCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSEIPCYWEN
QPVGCQKLNCAFHHTRSRYVDGLFLPPSKTVLPTVPESQEEEVKTSQLTVQQSKLSVQSNPSPQLRSVMK
VESSENVPSPTHPPVVINAADDDEDDDDQFSEEGDESKTPALQPSPDVHNGLRVASARKPGVSLKQGECL
NFGIKTLEEIKSKKMKEKSKKQGEGSSGVSSVLQQPQPNPGPEKENVRTVVRMVTLSSKPEEPLVRLSLS
ERLGKRKLSVGGDSDPPLKRSLAQRLGKKVESPETNIDKAPKKERGHKAGEIHVKTLEEILLERASQKRG
ELQTKLKAEEPSGADDSPSGTKSSSSVRIKTFSEVLAEKKHRQQEMERQKSKKDTSCLTLTDDTEMKKTV
SLPTVAVSKGQPEEPAGRARSMQEVHIKTLEEIKLEKALRVQQSSESSGNSRPQAEAAPGTKRLLRITKR
AGVKEEKKCGLEDSGDPPQSSVTKMEANETSDETISDPTKLAVNRCDTVKEKHTQRLQERGASQKEKAAL
SSVRGDEASSYTRVAGKPVLTAVSGVTRHLAKRLPVESSQKGEVETSGIGDSILNVKCAAQTLEKRSKVK
PKVNVKPSVVKVVSAPKLAPKRKAVEMHSAVIAAVKPLSSSSVLQESPTKKAAVAVVPLLSEDKPVTMSE
TENPKDSSVLSSAQAASEPLLPEGSGPSSSQTATKPRRLSSASTGKPPLSVEDDFEKLIWEISGGKLEAE
IDLDPGKDEDDLLLELSEMIDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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