NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36263.1 Public Mus musculus 11 Pigw 23 108 98 CCDS HistoryNCBI Gene:70325Re-query CCDS DB by CCDS ID:36263.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067058.2 ENSMUSP00000064547.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067058.2Link to Ensembl Protein Viewer:ENSMUSP00000064547.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000067058Re-query CCDS DB by Protein ID:ENSMUSP00000064547
Original member Current member EBI ENSMUST00000108080.2 ENSMUSP00000103715.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108080.2Link to Ensembl Protein Viewer:ENSMUSP00000103715.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108080Re-query CCDS DB by Protein ID:ENSMUSP00000103715
Original member Current member NCBI NM_001077636.1 NP_001071104.1 Accepted alive Link to Nucleotide Sequence:NM_001077636.1Link to Protein Sequence:NP_001071104.1Re-query CCDS DB by Nucleotide ID:NM_001077636Re-query CCDS DB by Protein ID:NP_001071104Link to BLAST:NP_001071104.1
Original member Current member NCBI NM_001363112.1 NP_001350041.1 Accepted alive Link to Nucleotide Sequence:NM_001363112.1Link to Protein Sequence:NP_001350041.1Re-query CCDS DB by Nucleotide ID:NM_001363112Re-query CCDS DB by Protein ID:NP_001350041Link to BLAST:NP_001350041.1
Original member Current member NCBI NM_027388.2 NP_081664.2 Accepted alive Link to Nucleotide Sequence:NM_027388.2Link to Protein Sequence:NP_081664.2Re-query CCDS DB by Nucleotide ID:NM_027388Re-query CCDS DB by Protein ID:NP_081664Link to BLAST:NP_081664.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071104.1 503 Q8C398 503 100% 0 0
NP_001350041.1 503 Q8C398 503 100% 0 0
NP_081664.2 503 Q8C398 503 100% 0 0

Chromosomal Locations for CCDS 36263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84876990 84878501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGTCTCAAAAGCAGCTGAAGGAAGCCTTTGTCAGGAACCTCAGTGGGACCAGTGTGCTGGAAGTGACCC
AGGGCCTGTGCTTTCCTGCCTTCTGTATCCTGTGTAGAGGCCTTTGGATCATCTTCTCACAGCACGTATG
CTCTTTCTCAAACACCTGGAGCACACGATTCCTCATGGACTTTGTTGTCTTGATAGTCCCCCTAGTGATC
ACTCTGACTGTATTGTCTTCCTTTATCCTCCTCGAGAATCTCACTGTGATTGTCTGGGGGGCATGGCTGT
TGTATCAGATATACCACAGGAGGACTTGCTACGCCAAAGTGCCTGTCCAGAAAGTCTTTGCAAACTTCTT
GAAAATCAGCCTAGAATCTGAGTACAATCCCGCAATCACCTGTTACCGGGTCATTAACAGCGTATTTACG
GCTATTGCCATTTTGGCCGTGGATTTCCCACTTTTCCCTAGAAGATTTGCCAAAACTGAACTTTATGGGA
CAGGAGCAATGGATTTTGGAGTAGGTGGCTTTATTTTTGGGGCGGCAATGGTTTGTCCAGAGGTTAGAAG
GAAATCTATAGAAGAGTCTAGATTTAATTATCTTAGAAAATCGCTGTATTCTGTCTGGCCATTGGTCTTC
TTAGGAATGGGACGGTTGGTCATTATAAAGTCCATAGGCTACCAGGAACATTCTACCGAGTACGGCATTC
ACTGGAACTTTTTCTTTACCATCATAGTTGTGCGATTAGTAACGTCACTGCTTTTGATTATTTTTCCTTT
AAATAAGTCGTGGATTGTGGCTGTCAGCATAACTGTGGTATACCAGCTAGCCCTGGATTATACTCCACTC
AAGAGGATACTTTTGTATGGCACTGATGGCAGTGGCACAAGGGTTGGCTTCTTAAATGCTAACCGAGAGG
GAATAATTTCCACTTTGGGGTATGTGACAATACACATGGCTGGTGTACAAACGGGATTGTATGTGCTTAA
GGGAAGAGCACAAGTCAGAGACTGGATAAAAGCTACTTGTTGGGTTTTCTCAGTAGCTGTTGGCTTCTTC
ATTTCTCTTCATATAGTGCAAGTAAACATAGAAGCAGTATCTCGAAGAATGGCCAATTTAGCCTTTTGTC
TGTGGGTAGTTGCTTCCAGTCTGATGCTTCTTAGTTGTCTGTTACTGAGTGGTATAATTTTGAGTTTTGC
CCAATTTCTAATTAAAGGGTCTCTAGTTCCATGTTCTTGGAAACTTATACAGTCTCCTACTACACATAAA
AACCATTCTGAATCTCTAATCTTAGAAGCTGAAAAAAACCAACCCAGTCTTTGTTTGATCACAGCTCTGA
ACAGAAACCAGCTGTTTTTTTTCTTACTGTCAAATATAACAACTGGTCTGATTAACCTGACGATGGATAC
ATTACACACTGGTGCCTTGTGGACCTTAGTTGTGCTCAGTATTTATATGTTTACCAACTGTTTAGTTATA
TATGTACTTGATTTACAAGGTAAAACCATAAAGTTTTGGTGA

Translation (503 aa):
MSQKQLKEAFVRNLSGTSVLEVTQGLCFPAFCILCRGLWIIFSQHVCSFSNTWSTRFLMDFVVLIVPLVI
TLTVLSSFILLENLTVIVWGAWLLYQIYHRRTCYAKVPVQKVFANFLKISLESEYNPAITCYRVINSVFT
AIAILAVDFPLFPRRFAKTELYGTGAMDFGVGGFIFGAAMVCPEVRRKSIEESRFNYLRKSLYSVWPLVF
LGMGRLVIIKSIGYQEHSTEYGIHWNFFFTIIVVRLVTSLLLIIFPLNKSWIVAVSITVVYQLALDYTPL
KRILLYGTDGSGTRVGFLNANREGIISTLGYVTIHMAGVQTGLYVLKGRAQVRDWIKATCWVFSVAVGFF
ISLHIVQVNIEAVSRRMANLAFCLWVVASSLMLLSCLLLSGIILSFAQFLIKGSLVPCSWKLIQSPTTHK
NHSESLILEAEKNQPSLCLITALNRNQLFFFLLSNITTGLINLTMDTLHTGALWTLVVLSIYMFTNCLVI
YVLDLQGKTIKFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH