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Report for CCDS37591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37591.1 Public Mus musculus 17 Slc44a4 23 108 98 CCDS HistoryNCBI Gene:70129Re-query CCDS DB by CCDS ID:37591.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007249.14 ENSMUSP00000007249.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007249.14Link to Ensembl Protein Viewer:ENSMUSP00000007249.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007249Re-query CCDS DB by Protein ID:ENSMUSP00000007249
Original member Current member NCBI NM_023557.3 NP_076046.1 Accepted alive Link to Nucleotide Sequence:NM_023557.3Link to Protein Sequence:NP_076046.1Re-query CCDS DB by Nucleotide ID:NM_023557Re-query CCDS DB by Protein ID:NP_076046Link to BLAST:NP_076046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076046.1 707 Q91VA1 707 100% 0 0

Chromosomal Locations for CCDS 37591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34914487 34914520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34916647 34916695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34917318 34917391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34917517 34917595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34918239 34918338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34918420 34918542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34918845 34918905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34921065 34921155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34921232 34921315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34921528 34921763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34921862 34921961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34923428 34923520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34923748 34923850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34927674 34927924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928018 34928112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928206 34928309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928420 34928493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928635 34928705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928808 34928902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928979 34929063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34930115 34930236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGGGAGAAAGCAGAATGAGAACGAGGCTCACGGGAATTCGGCCAAATATGACCCCTCCTTTCGAGGCC
CCATCAAAAACAGGGGCTGCACAGACATCATCTGCTGTGTCCTCTTCCTGATCTTCATTTTGGGTTACAT
CATAGTGGGGCTTGTGGCCTGGGTGTATGGAGACCCTCGGCAAGTGCTCTACCCCAGAAACTCCACGGGG
GCCTACTGCGGCGTGGGCGACAACAAGGATAAACCCTACGTTCTATACTTCGACATCTTAAGCTGTGCGG
CAGCTATCAACATCATCTCCATCGCTGAGAATGGCCTACAGTGCCCCACACCCCAGGTGTGCGTCTCTTC
CTGCCCACTGGCCCCATGGGCTGTGGAGGTGTTCCAGTTCTCAAAGACAGTCGGTGAAGTTTATGGTGAA
AGGAGAAACTTTTGTCTTCCAGCGGTGTCCCCAGATATGATAGTGGAGGAGAGCCTGCAGAAGGGACTCT
GTCCCCGTTTCCTTCTTCCTTCTACTCCAGCTCTGGGACGTTGTTTCCCACTCCCCAACATCAACTTCAC
GTTACCTGAAGACTTACGGATCAATAACACCACCGTCTCTAATGGCATCAGTGGCCTCCTGGACAGCATC
AATGCCCGGGATGTCTCTGTGAAGATCTTTGAAGATTTTGCCCAGTCCTGGTACTGGATTCTCGTAGCGC
TGGGTGTGGCCCTGGCACTAAGTCTGCTGTTCATCCTCCTCCTGCGCCTGGTGGCGGCACCCCTGGTGCT
GCTGCTGATTGTCGGGGTGCTCGCTGTGCTCGCCTATGGCATCTACCACTGCTGGCAACAGTACCAAGTG
TTTCGGGACAAGGGCGCCTCCATCACCCAACTGGGCTTCACTACCAACTTCAGTGCCTACCAGAGTGTGA
AGGAGACTTGGCTGGCTGCTTTGATTGTCCTGGCTGTCCTGGAGGGCATCTTGTTGCTTATGCTCATTTT
CCTGCGCCAGAGGATCCGGATCGCCATCGCTCTGCTGAAGGAAGCCAGCAGGGCTGTGGGGCAGATGATG
TCAACTATGTTCTACCCTCTGGTCACCTTCGTCCTCCTGGTCATTTGCATTGGTTACTGGGCCGTGACAG
CTCTATACCTGGCCACATCCGGGCAACCCCAGTACATCTACTGGGCGTCCAACACCAGTACACCGGGCTG
TGAGAACGTTCCTGTGAACATGACTTGTGACCCGATGGCCCCGTTGAATTCCTCGTGCCCAAACCTCAAG
TGCGTCTTCAAGGGCTACTCGACCACGGGCCTAGCTCAGCGTTCTCTCTTCAACCTGCAAATCTACGGAG
TCCTGGGGCTCTTCTGGACTGTTAACTGGGTACTGGCCCTGGGCCAGTGTGTCCTTGCCGGGGCCTTCGC
CTCTTTCTACTGGGCCTTTCACAAGCCTCGAGACATCCCTACCTTCCCTTTGAGCTCAGCCTTCATCCGC
ACACTCCGTTACCACACTGGCTCACTGGCGTTTGGAGCCCTCATCCTGTCCCTTGTGCAGATAGCCCGGG
TTATCCTGGAGTATATCGACCACAAGCTAAGAGGATCCCAGAACCCTGTGGCCCGCTGCATCATCTGCTG
CTTCAAGTGTTGCCTCTGGTGTCTGGAGAAGTTTATTAAGTTCCTCAACCGCAATGCCTACATCATGATC
GCCATCTATGGAAAGAATTTTTGTGTCTCGGCCAAAAATGCCTTCATGCTGCTCATGAGGAATGTTCTCA
GGGTCGTCGTCCTGGATAAAGTCACTGATCTGCTGCTGTTCTTTGGGAAGCTGCTGGTGGTTGGAGGTGT
CGGCGTTCTGTCCTTCTTCTTTTTCTCCGGTCGTATCAAGGGGCTGGGGAAAGACTTTGAGAACCCCAAC
CTCAACTATTATTGGCTGCCCATCATGACCTCCATCATGGGAGCCTACGTCATTGCCAGTGGCTTCTTCA
GCGTCTTTGGAATGTGTGTAGATACGCTCTTCCTCTGCTTCCTCGAGGACCTGGAGAGAAATGATGGTTC
CCAGGAGCGGCCTTACTACATGCCCAAGGCACTCCTGAAGATTCTGGGCAAGAAGAATGAGGCACCTACA
GGGGGAAAGACCAGGAAGAAGTGA

Translation (707 aa):
MGRKQNENEAHGNSAKYDPSFRGPIKNRGCTDIICCVLFLIFILGYIIVGLVAWVYGDPRQVLYPRNSTG
AYCGVGDNKDKPYVLYFDILSCAAAINIISIAENGLQCPTPQVCVSSCPLAPWAVEVFQFSKTVGEVYGE
RRNFCLPAVSPDMIVEESLQKGLCPRFLLPSTPALGRCFPLPNINFTLPEDLRINNTTVSNGISGLLDSI
NARDVSVKIFEDFAQSWYWILVALGVALALSLLFILLLRLVAAPLVLLLIVGVLAVLAYGIYHCWQQYQV
FRDKGASITQLGFTTNFSAYQSVKETWLAALIVLAVLEGILLLMLIFLRQRIRIAIALLKEASRAVGQMM
STMFYPLVTFVLLVICIGYWAVTALYLATSGQPQYIYWASNTSTPGCENVPVNMTCDPMAPLNSSCPNLK
CVFKGYSTTGLAQRSLFNLQIYGVLGLFWTVNWVLALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIR
TLRYHTGSLAFGALILSLVQIARVILEYIDHKLRGSQNPVARCIICCFKCCLWCLEKFIKFLNRNAYIMI
AIYGKNFCVSAKNAFMLLMRNVLRVVVLDKVTDLLLFFGKLLVVGGVGVLSFFFFSGRIKGLGKDFENPN
LNYYWLPIMTSIMGAYVIASGFFSVFGMCVDTLFLCFLEDLERNDGSQERPYYMPKALLKILGKKNEAPT
GGKTRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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