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Report for CCDS24030.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24030.2 Public Mus musculus 10 Mknk2 23 108 98 CCDS HistoryNCBI Gene:17347Re-query CCDS DB by CCDS ID:24030.2Re-query CCDS DB by GeneID:17347See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24030.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24030.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200082.4 ENSMUSP00000143508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200082.4Link to Ensembl Protein Viewer:ENSMUSP00000143508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200082Re-query CCDS DB by Protein ID:ENSMUSP00000143508
Original member NCBI NM_021462.4 NP_067437.2 Updated not alive Link to Nucleotide Sequence:NM_021462.4Link to Protein Sequence:NP_067437.2Re-query CCDS DB by Nucleotide ID:NM_021462Re-query CCDS DB by Protein ID:NP_067437
Current member NCBI NM_021462.5 NP_067437.2 Accepted alive Link to Nucleotide Sequence:NM_021462.5Link to Protein Sequence:NP_067437.2Re-query CCDS DB by Nucleotide ID:NM_021462Re-query CCDS DB by Protein ID:NP_067437Link to BLAST:NP_067437.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067437.2 459 Q8CDB0-1 459 100% 0 0

Chromosomal Locations for CCDS 24030.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80667107 80667332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80667613 80667656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80667966 80668130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80668522 80668716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80668945 80669040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80669155 80669210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80669298 80669402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80669630 80669703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80669896 80669975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80671559 80671656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80671736 80671837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80671928 80672015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80675824 80675874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGTGCAGAAGAGAACAGCCGAACTTCAGGGCTTCCACCGTTCGTTCAAGGGGCAGAATCCTTTCGAGT
TGGCCTTCTCCTTAGACCTCGCCCAGCACAGGGACTCTGACTTCAGCCCACAGTGTGAAGCCCGACCTGA
CATGCCTTCCAGCCAGCCCATTGACATCCCAGATGCCAAGAAGAGAGGCCGGAAAAAGAAGCGCTGTCGG
GCTACTGACAGCTTCTCAGGCAGGTTCGAAGATGTCTATCAGCTGCAGGAGGATGTGCTGGGGGAAGGTG
CTCACGCTCGTGTGCAGACCTGTGTCAATCTCATCACCAACCAGGAATATGCTGTCAAGATCATTGAGAA
GCAGCTGGGCCACATCCGCAGCAGGGTGTTCCGGGAGGTGGAGATGCTGTACCAGTGCCAGGGACATAGG
AATGTTCTAGAACTGATTGAGTTCTTTGAGGAGGAGGACCGTTTCTACCTGGTGTTTGAGAAGATGCGTG
GCGGATCCATCCTAAGCCACATCCATAGAAGGCGCCACTTTAACGAGCTGGAGGCCAGCGTGGTAGTACA
GGACGTGGCCAGTGCCCTGGACTTCCTGCATAACAAAGGCATCGCCCACAGGGACCTAAAGCCAGAGAAC
ATCCTATGTGAGCACCCCAACCAGGTCTCGCCAGTGAAGATCTGCGACTTCGACCTTGGCAGTGGTATCA
AACTCAATGGAGACTGCTCCCCCATCTCCACACCAGAGCTGCTCACCCCGTGTGGGTCAGCTGAGTACAT
GGCCCCAGAGGTGGTGGAGGCCTTCAGTGAAGAGGCCAGCATCTACGACAAGCGCTGCGACCTGTGGAGC
CTGGGCGTCATCCTCTACATCCTGCTTAGTGGCTACCCGCCCTTCGTGGGCCACTGTGGCAGCGACTGTG
GCTGGGACCGTGGGGAGGCCTGTCCTGCCTGCCAGAACATGCTGTTTGAGAGCATCCAGGAGGGCAAGTA
TGAGTTCCCTGACAAGGACTGGTCCCACATCTCCTTTGCTGCCAAAGACCTCATCTCCAAGCTGCTGGTC
CGAGATGCCAAGCAGAGGCTGAGTGCTGCCCAAGTCCTGCAGCATCCCTGGGTGCAGGGGTGTGCCCCAG
AGAACACCCTACCGACACCCTTGGTTCTGCAGAGGAACAGCTGTGCCAAAGACCTCACGTCCTTTGCGGC
TGAGGCCATCGCCATGAACCGGCAGCTGGCCCAGTGTGAGGAGGACGCTGGGCAGGACCAGCCTGTGGTC
ATCCGAGCTACCTCACGCTGCCTGCAGCTGTCCCCACCCTCCCAGTCCAAGCTGGCCCAGCGGCGCCAGA
GGGCTAGCCTGTCGGCCACCCCTGTGGTCCTTGTGGGGGATCGCGCATGA

Translation (459 aa):
MVQKRTAELQGFHRSFKGQNPFELAFSLDLAQHRDSDFSPQCEARPDMPSSQPIDIPDAKKRGRKKKRCR
ATDSFSGRFEDVYQLQEDVLGEGAHARVQTCVNLITNQEYAVKIIEKQLGHIRSRVFREVEMLYQCQGHR
NVLELIEFFEEEDRFYLVFEKMRGGSILSHIHRRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPEN
ILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWS
LGVILYILLSGYPPFVGHCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWSHISFAAKDLISKLLV
RDAKQRLSAAQVLQHPWVQGCAPENTLPTPLVLQRNSCAKDLTSFAAEAIAMNRQLAQCEEDAGQDQPVV
IRATSRCLQLSPPSQSKLAQRRQRASLSATPVVLVGDRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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