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Report for CCDS18239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18239.1 Public Mus musculus 4 Prpf4 23 108 98 CCDS HistoryNCBI Gene:70052Re-query CCDS DB by CCDS ID:18239.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084524.3 ENSMUSP00000081572.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084524.3Link to Ensembl Protein Viewer:ENSMUSP00000081572.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084524Re-query CCDS DB by Protein ID:ENSMUSP00000081572
Original member Current member NCBI NM_027297.3 NP_081573.1 Accepted alive Link to Nucleotide Sequence:NM_027297.3Link to Protein Sequence:NP_081573.1Re-query CCDS DB by Nucleotide ID:NM_027297Re-query CCDS DB by Protein ID:NP_081573Link to BLAST:NP_081573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081573.1 521 Q9DAW6 521 100% 0 0

Chromosomal Locations for CCDS 18239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62408875 62408901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62409575 62409752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62411696 62411882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62414543 62414630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62415175 62415254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62415402 62415495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62415964 62416058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62416652 62416710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62417846 62417969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62419276 62419365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62422178 62422300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62422415 62422522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62422603 62422721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62423218 62423411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCCTCCTCACGAGCCTCCTCCACGACAACCAAAACCAAAGCGCCTGACGATTTAGTTGCTCCCGTTG
TGAAGAAACCACACATCTACTATGGAAGCTTGGAAGAGAAAGAGCGGGAACGCCTGGCCAAAGGAGAGTC
TGGGATTTTGGGAAAAGAAGGACTCAAAGCCGGCATTGAAGCAGGAAATATTAATATAACATCCGGAGAA
GTGTTTGAAATTGAGGAGCACATCAGTGAGCGGCAGGCAGAAGTCTTGGCAGAGTTTGAAAGAAGAAAGC
GAGCCCGGCAGATCAATGTTTCCACAGATGACTCAGAGGTCAAGGCTTGCCTTCGAGCCTTGGGAGAGCC
TATCACGCTTTTTGGAGAGGGCCCTGCTGAACGAAGAGAAAGGTTAAGAAATATTCTCTCAGTGGTCGGG
ACTGATGCCTTAAAAAAGACGAAAAAAGATGATGAAAAGTCTAAGAAGTCAAAGGAGGAGTATCAGCAAA
CCTGGTACCATGAAGGGCCAAATAGCCTGAAGGTGGCCAGATTGTGGATTGCTAATTATTCACTCCCCAG
GGCAATGAAACGCTTAGAGGAGGCCCGTCTCCATAAGGAGATTCCTGAGACAACCAGAACCTCCCAGATG
CAGGAGCTGCACAAGTCTCTCCGGTCTTTGAATAATTTCTGCAGTCAGATTGGAGATGACCGGCCGATCT
CCTACTGCCACTTCAGCCCCAATTCTAAAATGCTAGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTG
GTCTGTCCCTGACTGCAGCCTCCTTCACACTCTTCGAGGCCATAACACAAATGTAGGAGCAATTGTATTC
CATCCCAAATCCACTGTCTCGTTGGACCAGAAGGATGTCAACCTGGCCTCTTGTGCTGCTGATGGTTCTG
TGAAGCTTTGGAGCCTTGACAGCGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTAGCTCG
GGTAATGTGGCATCCATCAGGGCGTTTCCTGGGCACAACCTGTTATGACCGTTCATGGCGCTTATGGGAT
TTAGAGGCTCAAGAGGAGATCCTGCACCAGGAAGGCCACAGCATGGGTGTGTATGACATTGCCTTCCATC
AAGATGGCTCTTTGGCTGGCACTGGGGGACTGGATGCATTTGGCCGGGTTTGGGACCTACGCACAGGACG
CTGCATTATGTTCCTGGAAGGCCACCTGAAGGAAATCTATGGGATAAATTTCAGCCCCAATGGCTACCAC
ATTGCCACTGGCAGTGGTGACAACACCTGCAAAGTGTGGGACCTTCGGCAGCGACGCTGTGTCTACACCA
TCCCCGCCCATCAGAACTTAGTGACCGGTGTCAAATTTGAGCCTATCCATGGGGACTTCTTGCTCACAGG
TGCCTATGACAATACAGCCAAGATCTGGACCCACCCAGGCTGGTCCCCACTGAAGACCCTGGCTGGTCAT
GAGGGCAAAGTGATGGGCCTGGACATTTCTTCTGATGGGCAGCTCATAGCCACGTGCTCCTATGACAGAA
CCTTCAAGCTCTGGATGGCAGAGTAG

Translation (521 aa):
MASSRASSTTTKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGE
VFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVG
TDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQM
QELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVF
HPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWD
LEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSPLKTLAGH
EGKVMGLDISSDGQLIATCSYDRTFKLWMAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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