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Report for CCDS18598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18598.1 Public Mus musculus 4 Smap2 23 108 98 CCDS HistoryNCBI Gene:69780Re-query CCDS DB by CCDS ID:18598.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043200.7 ENSMUSP00000035800.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043200.7Link to Ensembl Protein Viewer:ENSMUSP00000035800.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043200Re-query CCDS DB by Protein ID:ENSMUSP00000035800
Original member Current member NCBI NM_133716.3 NP_598477.2 Accepted alive Link to Nucleotide Sequence:NM_133716.3Link to Protein Sequence:NP_598477.2Re-query CCDS DB by Nucleotide ID:NM_133716Re-query CCDS DB by Protein ID:NP_598477Link to BLAST:NP_598477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598477.2 428 Q7TN29-1 428 100% 0 0

Chromosomal Locations for CCDS 18598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120969539 120969664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120971890 120972206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120973093 120973258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120974386 120974492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120975372 120975453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120976951 120977037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120982127 120982205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120983107 120983192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120985195 120985328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121016749 121016851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGACAGGCAAGTCGGTGAAGGACGTGGATCGGTACCAGGCGGTCCTGGCCAACCTGCTGCTGGAGGAAG
ATAACAAGTTCTGTGCTGACTGCCAGTCCAAAGGGCCGAGATGGGCCTCCTGGAACATCGGGGTGTTCAT
CTGCATTCGGTGTGCTGGGATCCACAGGAATTTGGGGGTGCATATATCCAGGGTAAAATCAGTGAACCTC
GACCAGTGGACTCAAGAACAGATTCAGTGCATGCAAGAGATGGGGAATGGAAAAGCAAACCGACTCTATG
AAGCCTACCTTCCCGAGACCTTTCGGCGACCTCAGATAGACCCAGCTGTTGAAGGATTTATTCGAGATAA
ATATGAGAAGAAGAAATATATGGACCGAAGTCTGGACATCAATGTCCTTAGGAAAGAGAAGGATGATAAG
TGGAAACGAGGGAATGAACCCGCTCCGGAGAAAAAGATGGAACCTGTTGTTTTTGAGAAAGTAAAAATGC
CACAGAAAAAAGAAGACGCACAGCTACCTCGGAAAAGCTCTCCGAAATCTGCAGCCCCTGTCATGGACTT
GTTGGGCCTTGATGCTCCTGTGGCCTGCTCAATTGCAAACAGTAAGACCAGCAATGCCCTAGAAAAGGAT
CTAGATCTTTTGGCCTCTGTTCCGTCCCCTTCTTCAGTTTCCAGAAAGGCTGTAGGTTCCATGCCAACTG
CAGGGAGTGCTGGTTCTGTCCCTGAAAACCTGAACCTATTTCCAGAGCCAGGGAGCAAATCAGAAGAAAC
AGGCAAGAAACAGCTCTCCAAGGACTCCATCCTATCACTGTATGGATCCCAGACGCCTCAAATGCCTGCC
CAAGCAATGTTCATGGCTCCTGCTCAGATGGCATACCCCACAGCTTACCCCAGTTTCCCCGGGGTTACAC
CACCTAACAGCATCATGGGGGGCATGGTGCCTCCGCCAGTAGGCATGGTAGCTCAACCGGGAGCCTCTGG
AATGCTAACCCCTATGGCCATGCCTGCAGGCTATATGGGGGGCATGCAGGCGTCCATGATGGGTGTGCCG
AACGGGATGATGACCACTCAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATGCCGCAGACTGTGTATG
GAGTTCAGCCAGCTCAGCAACTGCAATGGAACCTTACTCAGATGACCCAGCAAATGGCTGGGATGAACTT
CTACGGAGCCAACGGCATGATGAACTATGGACAGTCAATGGGCGGTGGAAATGGCCAGGCAGCCAATCAG
ACTCTCAGTCCTCAGATGTGGAAATAA

Translation (428 aa):
MTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL
DQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDINVLRKEKDDK
WKRGNEPAPEKKMEPVVFEKVKMPQKKEDAQLPRKSSPKSAAPVMDLLGLDAPVACSIANSKTSNALEKD
LDLLASVPSPSSVSRKAVGSMPTAGSAGSVPENLNLFPEPGSKSEETGKKQLSKDSILSLYGSQTPQMPA
QAMFMAPAQMAYPTAYPSFPGVTPPNSIMGGMVPPPVGMVAQPGASGMLTPMAMPAGYMGGMQASMMGVP
NGMMTTQQAGYMASMAAMPQTVYGVQPAQQLQWNLTQMTQQMAGMNFYGANGMMNYGQSMGGGNGQAANQ
TLSPQMWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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