NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29601.1 Public Mus musculus 19 Ms4a6b 23 108 98 CCDS HistoryNCBI Gene:69774Re-query CCDS DB by CCDS ID:29601.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025580.9 ENSMUSP00000025580.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025580.9Link to Ensembl Protein Viewer:ENSMUSP00000025580.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025580Re-query CCDS DB by Protein ID:ENSMUSP00000025580
Original member Current member EBI ENSMUST00000163078.7 ENSMUSP00000124685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163078.7Link to Ensembl Protein Viewer:ENSMUSP00000124685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163078Re-query CCDS DB by Protein ID:ENSMUSP00000124685
Original member Current member NCBI NM_027209.3 NP_081485.2 Accepted alive Link to Nucleotide Sequence:NM_027209.3Link to Protein Sequence:NP_081485.2Re-query CCDS DB by Nucleotide ID:NM_027209Re-query CCDS DB by Protein ID:NP_081485Link to BLAST:NP_081485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081485.2 244 Q99N09 244 100% 0 0

Chromosomal Locations for CCDS 29601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11520339 11520485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11521671 11521805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11523910 11523966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11526700 11526897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11528574 11528675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11529488 11529583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGATTCCACAAGTAGTGACCAGTGAGACTGTGGCAATGATTTCGCCAAATGGAATGAGTCTTCCCCAAA
CAGACAAACCCCAGCCTTTCCACCAGTGGCAAGACAGCCTGAAGAAACATCTAAAGGCTGAGATCAAAGT
GATGGCGGCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCC
TCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGT
TTTTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTGGTAGACAGCAG
CCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCT
GGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACC
AATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCTGGAGTCTTTTCACTGATGCTGAT
CAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGTGGAAACAGAGTCACTCTAAC
ATCCCTGGGAATGTTATGTTCCTGCCACATAGCTCAAATAATGACTCCAACATGGAATCAAAGGTACTTT
GTAACCCCTCATATGAGGAACAATTGGTTTGTTAA

Translation (244 aa):
MIPQVVTSETVAMISPNGMSLPQTDKPQPFHQWQDSLKKHLKAEIKVMAAIQIMCAVMVLSLGIILASVP
SNLHFTSVFSVLLKSGYPFIGALFFIVSGILSIVTETKSTKILVDSSLTLNILSVSFAFMGIIIISVSLA
GLHPASEQCLQSKELRPTEYHYYQFLDRNECFAAKSVLAGVFSLMLISTMLELGLAVLTAMLWWKQSHSN
IPGNVMFLPHSSNNDSNMESKVLCNPSYEEQLVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH