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Report for CCDS23292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23292.1 Public Mus musculus 9 Mtfmt 23 108 98 CCDS HistoryNCBI Gene:69606Re-query CCDS DB by CCDS ID:23292.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074792.6 ENSMUSP00000074347.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074792.6Link to Ensembl Protein Viewer:ENSMUSP00000074347.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074792Re-query CCDS DB by Protein ID:ENSMUSP00000074347
Original member Current member NCBI NM_027134.3 NP_081410.2 Accepted alive Link to Nucleotide Sequence:NM_027134.3Link to Protein Sequence:NP_081410.2Re-query CCDS DB by Nucleotide ID:NM_027134Re-query CCDS DB by Protein ID:NP_081410Link to BLAST:NP_081410.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081410.2 386 Q9D799 386 100% 0 0

Chromosomal Locations for CCDS 23292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65435814 65436007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65436988 65437197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65439530 65439652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65440346 65440448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65441613 65441688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65443879 65443970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65447224 65447302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65448696 65448778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65452005 65452205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGCTCCTTCCGCGGTGCTGCTGGGGTCGGTGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAAGCAC
CTGCCGGGTTCGACGGGAAGGACGGCCGAGGTTCCCGAGTCCGCGAGAAGCCGCCTTGGCGGGTGCTGTT
CCTCGGCACCGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGCACGCCGCCAGAGACGGCAAAGAGGAA
AAGTTAATTGAGAAACTGGAGGTTGTCACAGTGCCTTCGCTATCCCCCAAAGGACTACCTGTGAAGCAAT
ATGCTATTCAGTCTCAGCTCCCGGTGTACGAGTGGCCCGACGTGGGATCTGGAGAATATGATGTTGGGGT
AGTGGCTTCCTTTGGCCGGCTTTTGAGTGAGGCTCTTATTCTTAAATTTCCCTACGGCATACTGAATGTG
CACCCCAGTTGCCTCCCGAGGTGGCGTGGTCCCGCTCCGATAATCCACACGGTGCTTCATGGAGACACTG
TCACTGGCGTAACGATTATGCAAATTAGACCCAAAAGATTTGATATAGGCCCAATTCTCCAGCAGGAAAC
CATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGTTGTCAAAACTTGGTGCCAACATG
CTTATCTCAGTTTTGAAAAATCTGCCCGAAAGTCTGAACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGA
CATATGCCCCCAAGGTCTCTGCTGGCACCAGCTGTGTCAAGTGGGAGGAGCAAACCTCAGAGCAAGTACT
CAGACTTCACCTTGCCATTGGGGATATAGTCCCACTGCAGACGCTCTGGATGGAGAACACCGTTAAACTT
CTGGATCTCGTAGAAGTTAACAATTCCATCCTTGCAGATCCGAAATTAACAGGACAAACTGTAACTCCGG
GGTTCGTGGTGTACCACAGACCATCGCAAATGCTGCTGGTTCGCTGTAAGGATGGCTGGATCGGTGTTCG
GTCAGTAATGCTTAAGAAAACACTAACAGCTACTGATTTCTACAATGGATATTTGCATGCGTGGTACCAG
AAAAATTCCCACGCTCACCCAAGCCAGTGCAGATTTCAGACTCTCAGACTTCCAACAAAGATGCAGCAGA
AAACAAAGTTGTTGCTATGCAACAGTGCATTAAGTAGCTAG

Translation (386 aa):
MLLPRCCWGRWLMGRRPRCSCQAPAGFDGKDGRGSRVREKPPWRVLFLGTDHFARETLRALHAARDGKEE
KLIEKLEVVTVPSLSPKGLPVKQYAIQSQLPVYEWPDVGSGEYDVGVVASFGRLLSEALILKFPYGILNV
HPSCLPRWRGPAPIIHTVLHGDTVTGVTIMQIRPKRFDIGPILQQETIPVPPKSTSKELEAVLSKLGANM
LISVLKNLPESLNNGRPQPAEGVTYAPKVSAGTSCVKWEEQTSEQVLRLHLAIGDIVPLQTLWMENTVKL
LDLVEVNNSILADPKLTGQTVTPGFVVYHRPSQMLLVRCKDGWIGVRSVMLKKTLTATDFYNGYLHAWYQ
KNSHAHPSQCRFQTLRLPTKMQQKTKLLLCNSALSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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