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Report for CCDS19394.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19394.2 Public Mus musculus 5 Odam 23 108 98 CCDS HistoryNCBI Gene:69592Re-query CCDS DB by CCDS ID:19394.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19394.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19394.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113274.2 ENSMUSP00000108899.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113274.2Link to Ensembl Protein Viewer:ENSMUSP00000108899.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113274Re-query CCDS DB by Protein ID:ENSMUSP00000108899
Original member Current member EBI ENSMUST00000129757.8 ENSMUSP00000117898.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129757.8Link to Ensembl Protein Viewer:ENSMUSP00000117898.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000129757Re-query CCDS DB by Protein ID:ENSMUSP00000117898
Original member Current member NCBI NM_027128.3 NP_081404.2 Accepted alive Link to Nucleotide Sequence:NM_027128.3Link to Protein Sequence:NP_081404.2Re-query CCDS DB by Nucleotide ID:NM_027128Re-query CCDS DB by Protein ID:NP_081404Link to BLAST:NP_081404.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081404.2 273 A1E960 273 100% 0 0

Chromosomal Locations for CCDS 19394.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87885712 87885762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87885854 87885895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87886556 87886603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87887320 87887550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87887940 87887984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87889366 87889467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87890087 87890134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87891352 87891423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87892316 87892468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87892683 87892712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGAAAATTATAATTCTTCTTGGACTCATAGGAGCCTCATCATCAGCCCCGCTTATCTCGCAGCGTCTAT
TGTCTGCTAGCAACAGTCATGAGCTACTCCTGAATCTTAATAATGGTCAACTTTTGCCACTGCAGTTCCA
GGGTGCCTTCAACTCCTGGATTCCTCCCTTCCCTGGGTTTCTGCAGCAGCAGCAGGCTCAGGTCTCAGGA
CGCCCACAGTTTACTCTCTCAACACTAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCTTTATCAA
GACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGGCCAGCCAGACCTCTCTCAGCAGCAGACACCACCTCA
GACCCAGCAGAGTGCTAGCCCTATGTCCTATGTGGTACCTGTCAAAGTACCTCAAGATCAAACACAGATG
TTTCAGTACTATCCAGTTTACATGCTTCTGCCCTGGGAGCAGCCTCAGACCGTCACATCCTCACCACAGC
ACACAGGGCAGCAGCTATTTGAGGAACAGATACCTTTCTATAATCAATTTGGATTCGCACCACCACAAGC
AGAACCTGGGGTACCAGGAGGGCAGCAGCACTTAGCTTTTGACAGCTTTGTAGGCACAGCTCCAGAAACT
CCTGGAATGCCAGTAGAAGGAAGCCTGCTTTATCCACAAAAAGAACCAATCAGCTTTAAGCATGATAATG
CAGGAGTTTTCATGCCTACAACTTCACCAAAGCCCAGCACCGACAATTTTTTCACTTCTGGGATAGATCC
AACTATTGCTCCAGAACAGAAGGTCAAGACTGATAGTCTAAGAGAACCATAA

Translation (273 aa):
MKIIILLGLIGASSSAPLISQRLLSASNSHELLLNLNNGQLLPLQFQGAFNSWIPPFPGFLQQQQAQVSG
RPQFTLSTLESFAGLFPNQIPLSRQVGLAQGGQAGQPDLSQQQTPPQTQQSASPMSYVVPVKVPQDQTQM
FQYYPVYMLLPWEQPQTVTSSPQHTGQQLFEEQIPFYNQFGFAPPQAEPGVPGGQQHLAFDSFVGTAPET
PGMPVEGSLLYPQKEPISFKHDNAGVFMPTTSPKPSTDNFFTSGIDPTIAPEQKVKTDSLREP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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