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Report for CCDS15774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15774.1 Public Mus musculus 2 Clic3 23 108 98 CCDS HistoryNCBI Gene:69454Re-query CCDS DB by CCDS ID:15774.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15774.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114265.8 ENSMUSP00000109904.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114265.8Link to Ensembl Protein Viewer:ENSMUSP00000109904.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114265Re-query CCDS DB by Protein ID:ENSMUSP00000109904
Original member Current member NCBI NM_027085.3 NP_081361.1 Accepted alive Link to Nucleotide Sequence:NM_027085.3Link to Protein Sequence:NP_081361.1Re-query CCDS DB by Nucleotide ID:NM_027085Re-query CCDS DB by Protein ID:NP_081361Link to BLAST:NP_081361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081361.1 237 Q9D7P7 237 100% 0 0

Chromosomal Locations for CCDS 15774.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25456879 25456914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25457661 25457770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25457849 25457974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25458115 25458221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25458304 25458479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25458565 25458723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCTGAAACCACCAAGCTCCAGCTCTTTGTGAAGGCCAGTGAGGATGGCGAGAGCGTAGGACACTGCC
CTTCCTGTCAGCGGCTCTTCATGGTCCTACTCCTCAAGGGTGTGCCCTTCACACTCACCACAGTGGACAC
TCGAAGGGCATTGGATGTGCTGAAGGACTTCGCACCAGGCTCACAGCTGCCCATCCTGCTGTACGATGGG
GATGTCAAGACAGACACACTGCAGATCGAGGAGTTTCTGGAGGAGACGTTGGGGCCACCTGACTTCCCTA
GCCTGGCACCCAGGTACAGGGAGTCCAACACAGCGGGCAATGACATCTTCCACAAGTTCTCTGCCTTCAT
CAAGAACCCAGTGCCTACACAGGACAATGCCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGAC
AGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCT
TTCTCGATGGTGACCAGTTCACGTTGGCTGACTGCAGTCTACTACCCAAGCTGCACATTGTGGATACCGT
GTGTGCACACTTCCGCCAGCTGCCCATCCCCGCGGAACTGTCCTGCGTTCGTCGCTACTTGGACAGTGCG
TTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGCCTGCTG
TGCACCCCCGTTAG

Translation (237 aa):
MAETTKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDG
DVKTDTLQIEEFLEETLGPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLD
SYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSA
LQKKEFKYTCPHSAEILAAYQPAVHPR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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