NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53196.1 Public Mus musculus X H2bw2 23 108 98 CCDS HistoryNCBI Gene:69389Re-query CCDS DB by CCDS ID:53196.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059808.4 ENSMUSP00000055261.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059808.4Link to Ensembl Protein Viewer:ENSMUSP00000055261.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059808Re-query CCDS DB by Protein ID:ENSMUSP00000055261
Original member Current member NCBI NM_027067.2 NP_081343.1 Accepted alive Link to Nucleotide Sequence:NM_027067.2Link to Protein Sequence:NP_081343.1Re-query CCDS DB by Nucleotide ID:NM_027067Re-query CCDS DB by Protein ID:NP_081343Link to BLAST:NP_081343.1

Chromosomal Locations for CCDS 53196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136927364 136928038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCGTCTACCACGGCTATGGACGTTCTGGAGGAGCTATCTTCGGATAGTTCCGAAAAACAGGTACAAC
CAAGAAAGCCTGAGAAAGCTAAAAGGGAAAAGGACAAACCAAAGAAAGGGGGGCCGGAGAAGAAGGCCAA
GAAAGAGAAACAGGAGAAAGCAAAGCCGGAGAAAAAGCCGAAGAAGAAGCCAGAGAAAGAGAAGCCGGAG
GGAGAGAAGCTGGAGAAGAAACCCAAGAAAGACAAGCGGGAGAAAGCGAAGCCGAAGAAGAAGCCCGAGC
AAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGTGCAGCGGCGTCGCTCACTTCACCA
AAGCATCAGGGAAGATGAGCGTAGAGCCCGTCTGATCAGACGCCGTAAGAACAGCTTCGCTATCTACTTT
CCGAAGGTGCTGAAAAATATCCACGTGGGTCTCTCCCTCTCGCAGCGGTCTGTGAACATCCTGGATTCAT
TCGTGAAGGATATGTTTGAAAGAATTGCATCCGAAGCCAGCTTCTTGGCGCGTCAAGCCAGAAACTCTAC
TATCAACTCCAGAGAGATCCAGACCGCTATTCGACTTCTGCTTCCTGGCGAGCTCTGCCGGCGTGCAGTG
GCTGAAGGAACCATGGCGATGGTCCGGTATATCTCCAACAAGTAA

Translation (224 aa):
MASTTAMDVLEELSSDSSEKQVQPRKPEKAKREKDKPKKGGPEKKAKKEKQEKAKPEKKPKKKPEKEKPE
GEKLEKKPKKDKREKAKPKKKPEQENREQETPEQEKPEVQRRRSLHQSIREDERRARLIRRRKNSFAIYF
PKVLKNIHVGLSLSQRSVNILDSFVKDMFERIASEASFLARQARNSTINSREIQTAIRLLLPGELCRRAV
AEGTMAMVRYISNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH