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Report for CCDS22957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22957.1 Public Mus musculus 9 Dcps 23 108 98 CCDS HistoryNCBI Gene:69305Re-query CCDS DB by CCDS ID:22957.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034539.11 ENSMUSP00000034539.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034539.11Link to Ensembl Protein Viewer:ENSMUSP00000034539.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034539Re-query CCDS DB by Protein ID:ENSMUSP00000034539
Original member Current member NCBI NM_027030.2 NP_081306.1 Accepted alive Link to Nucleotide Sequence:NM_027030.2Link to Protein Sequence:NP_081306.1Re-query CCDS DB by Nucleotide ID:NM_027030Re-query CCDS DB by Protein ID:NP_081306Link to BLAST:NP_081306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081306.1 338 Q9DAR7 338 100% 0 0

Chromosomal Locations for CCDS 22957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35124572 35124844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35126307 35126417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35129461 35129574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35136344 35136489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35171077 35171251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35175771 35175968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCGGATACAGCGCCTCAACTCAAGAGAAAGCGCGAACAGGAGGCAGAGGAGGCAGAAACCCCCAGCA
CAGAGGAGAAGGAAGCAGGCGTTGGCAATGGCACCTCTGCCCCTGTCCGCTTACCGTTCTCCGGCTTTAG
AGTACAAAAAGTGCTCAGGGAGTCTGCGCGGGACAAAATTATTTTCCTGCATGGGAAGGTGAATGAGGAC
TCTGGGGATACTCATGGAGAAGATGCGGTTGTGATCCTGGAGAAGACACCATTTCAGGTAGAACACGTGG
CGCAGCTCCTAACGGGGAGCCCTGAGCTCAAGTTGCAGTTCTCCAATGATATCTACAGCACCTATAACCT
GTTTCCTCCAAGGCATCTGAGTGATATAAAAACAACTGTGGTGTACCCTGCCACAGAGAAACACCTGCAA
AAATACATGCGTCAGGACCTCCGCCTGATCCGAGAGACTGGAGATGACTACAGGACCATCACCTTACCCT
ACCTGGAATCCCAGAGCCTTAGCATCCAGTGGGTGTATAACATTCTTGACAAGAAGGCTGAAGCTGACCG
GATTGTTTTTGAGAACCCAGACCCTTCTGATGGCTTTGTCCTCATCCCAGACCTCAAGTGGAACCAGCAG
CAGCTTGATGACCTGTATTTGATCGCCATCTGCCATCGCCGGGGTATCAGATCACTTCGAGATCTCACTC
CAGAGCATCTGCCACTACTGAGGAACATTCTCCGGGAAGGACAAGAAGCCATCCTGAAGCGCTACCAGGT
GACAGGAGACCGTCTGCGAGTGTACCTACACTACCTGCCCTCTTACTATCACCTGCACGTGCATTTCACA
GCTCTGGGCTTCGAGGCTCCGGGCTCAGGGGTGGAGCGGGCACACCTGCTGGCTCAAGTGATCGAGAACC
TGGAGTGTGACCCCAAGCACTATCAACAGCGCACTCTTACTTTTGCCCTCAGGACCGATGACCCCCTGCT
TCAGCTCCTGCAGAAGGCCCAGCAAGAGAGGAACTAG

Translation (338 aa):
MADTAPQLKRKREQEAEEAETPSTEEKEAGVGNGTSAPVRLPFSGFRVQKVLRESARDKIIFLHGKVNED
SGDTHGEDAVVILEKTPFQVEHVAQLLTGSPELKLQFSNDIYSTYNLFPPRHLSDIKTTVVYPATEKHLQ
KYMRQDLRLIRETGDDYRTITLPYLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQ
QLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFT
ALGFEAPGSGVERAHLLAQVIENLECDPKHYQQRTLTFALRTDDPLLQLLQKAQQERN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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