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Report for CCDS21866.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21866.2 Public Mus musculus 7 Zfp688 23 108 98 CCDS HistoryNCBI Gene:69234Re-query CCDS DB by CCDS ID:21866.2See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21866.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and protein data. The update adds a KRAB domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21866.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106300.1 ENSMUSP00000101907.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106300.1Link to Ensembl Protein Viewer:ENSMUSP00000101907.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106300Re-query CCDS DB by Protein ID:ENSMUSP00000101907
Original member Current member NCBI NM_026999.4 NP_081275.3 Accepted alive Link to Nucleotide Sequence:NM_026999.4Link to Protein Sequence:NP_081275.3Re-query CCDS DB by Nucleotide ID:NM_026999Re-query CCDS DB by Protein ID:NP_081275Link to BLAST:NP_081275.3

Chromosomal Locations for CCDS 21866.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127419127 127419641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127421405 127421518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127421809 127422004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCGCCACCCCCGGCCTCACTGCTGGTTCCGATGCCTGGGGAGATCTGGCCCGGTTTCAGGAAGCCTG
AGCTTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGCAGGAGTGGGGGTGTCTGCGGCCCGCGCA
GAGAACCCTGTATCGGGAGGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCGGGTTCCCGGGCCCC
AAACCAGCCCTCATCTCTTGGATGGAACAGGGGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGG
AGGGGGAAAGCCTGGGAGGAGCTCCGAGAGGAGACATTCCAAATGAGACAGAGTGGGGCTGCAAGGAAGG
AGGAGAGAGACCGGCAGAGGCTCCTGCTCAGTTGCAACCTAAAGAGGTGGTTGAACATAAGACTTATTCC
ATGGCTACCAAGTCCTCTGCAGGGGCACAGCCACCTACCAAAGCTGCCCCAGACCAGATAGCAGGTGTGC
AGCTTCCTGTCCAGGTACCAAACACCGATATTCAGGCCAGCCAGCGACGTCATGTGTGTGTGGACTGTGG
ACGCCGGTTTACCTATCCATCTTTGCTGGTCAGCCACCGGCGCATGCACTCTGGTGAGCGACCCTTCCCC
TGCCCAGAGTGTGGTGTACGCTTCAAGAGGAAGTTCGCAGTGAAAGCACACCAATGGATCCACCGTTCCT
GCTCAGGGGGTCGCCGCGGCCGAAGGCCTGGGATCAGGGCTGTGCCTGGAGCCCCAGTCCGAGGTGACCG
GGATCCACCAGTGCTCTTTCGGCACTATCCAGACATTTTTGAGGAGTGTGGGTGA

Translation (274 aa):
MAPPPASLLVPMPGEIWPGFRKPELVSFADVAVYFSPQEWGCLRPAQRTLYREVMRETYGLLGALGFPGP
KPALISWMEQGSEAWSPAAQDPEEGESLGGAPRGDIPNETEWGCKEGGERPAEAPAQLQPKEVVEHKTYS
MATKSSAGAQPPTKAAPDQIAGVQLPVQVPNTDIQASQRRHVCVDCGRRFTYPSLLVSHRRMHSGERPFP
CPECGVRFKRKFAVKAHQWIHRSCSGGRRGRRPGIRAVPGAPVRGDRDPPVLFRHYPDIFEECG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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