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Report for CCDS700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
700.1 Public Homo sapiens 1 LPAR3 24 110 108 CCDS HistoryNCBI Gene:23566Re-query CCDS DB by CCDS ID:700.1Re-query CCDS DB by GeneID:23566See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370611.4 ENSP00000359643.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370611.4Link to Ensembl Protein Viewer:ENSP00000359643.3Re-query CCDS DB by Nucleotide ID:ENST00000370611Re-query CCDS DB by Protein ID:ENSP00000359643
Original member Current member EBI ENST00000440886.1 ENSP00000395389.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440886.1Link to Ensembl Protein Viewer:ENSP00000395389.1Re-query CCDS DB by Nucleotide ID:ENST00000440886Re-query CCDS DB by Protein ID:ENSP00000395389
Original member Current member NCBI NM_012152.3 NP_036284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012152.3Link to Protein Sequence:NP_036284.1Re-query CCDS DB by Nucleotide ID:NM_012152Re-query CCDS DB by Protein ID:NP_036284Link to BLAST:NP_036284.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036284.1 353 Q9UBY5 353 100% 0 0

Chromosomal Locations for CCDS 700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84813846 84814171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84865385 84866120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGAATGAGTGTCACTATGACAAGCACATGGACTTTTTTTATAATAGGAGCAACACTGATACTGTCGATG
ACTGGACAGGAACAAAGCTTGTGATTGTTTTGTGTGTTGGGACGTTTTTCTGCCTGTTTATTTTTTTTTC
TAATTCTCTGGTCATCGCGGCAGTGATCAAAAACAGAAAATTTCATTTCCCCTTCTACTACCTGTTGGCT
AATTTAGCTGCTGCCGATTTCTTCGCTGGAATTGCCTATGTATTCCTGATGTTTAACACAGGCCCAGTTT
CAAAAACTTTGACTGTCAACCGCTGGTTTCTCCGTCAGGGGCTTCTGGACAGTAGCTTGACTGCTTCCCT
CACCAACTTGCTGGTTATCGCCGTGGAGAGGCACATGTCAATCATGAGGATGCGGGTCCATAGCAACCTG
ACCAAAAAGAGGGTGACACTGCTCATTTTGCTTGTCTGGGCCATCGCCATTTTTATGGGGGCGGTCCCCA
CACTGGGCTGGAATTGCCTCTGCAACATCTCTGCCTGCTCTTCCCTGGCCCCCATTTACAGCAGGAGTTA
CCTTGTTTTCTGGACAGTGTCCAACCTCATGGCCTTCCTCATCATGGTTGTGGTGTACCTGCGGATCTAC
GTGTACGTCAAGAGGAAAACCAACGTCTTGTCTCCGCATACAAGTGGGTCCATCAGCCGCCGGAGGACAC
CCATGAAGCTAATGAAGACGGTGATGACTGTCTTAGGGGCGTTTGTGGTATGCTGGACCCCGGGCCTGGT
GGTTCTGCTCCTCGACGGCCTGAACTGCAGGCAGTGTGGCGTGCAGCATGTGAAAAGGTGGTTCCTGCTG
CTGGCGCTGCTCAACTCCGTCGTGAACCCCATCATCTACTCCTACAAGGACGAGGACATGTATGGCACCA
TGAAGAAGATGATCTGCTGCTTCTCTCAGGAGAACCCAGAGAGGCGTCCCTCTCGCATCCCCTCCACAGT
CCTCAGCAGGAGTGACACAGGCAGCCAGTACATAGAGGATAGTATTAGCCAAGGTGCAGTCTGCAATAAA
AGCACTTCCTAA

Translation (353 aa):
MNECHYDKHMDFFYNRSNTDTVDDWTGTKLVIVLCVGTFFCLFIFFSNSLVIAAVIKNRKFHFPFYYLLA
NLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDSSLTASLTNLLVIAVERHMSIMRMRVHSNL
TKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLAPIYSRSYLVFWTVSNLMAFLIMVVVYLRIY
VYVKRKTNVLSPHTSGSISRRRTPMKLMKTVMTVLGAFVVCWTPGLVVLLLDGLNCRQCGVQHVKRWFLL
LALLNSVVNPIIYSYKDEDMYGTMKKMICCFSQENPERRPSRIPSTVLSRSDTGSQYIEDSISQGAVCNK
STS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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