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Report for CCDS59664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59664.1 Public Mus musculus 4 Smim1 23 108 98 CCDS HistoryNCBI Gene:68859Re-query CCDS DB by CCDS ID:59664.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125533.8 ENSMUSP00000138324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125533.8Link to Ensembl Protein Viewer:ENSMUSP00000138324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125533Re-query CCDS DB by Protein ID:ENSMUSP00000138324
Original member Current member EBI ENSMUST00000145527.7 ENSMUSP00000138448.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145527.7Link to Ensembl Protein Viewer:ENSMUSP00000138448.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145527Re-query CCDS DB by Protein ID:ENSMUSP00000138448
Original member Current member EBI ENSMUST00000132541.7 ENSMUSP00000138471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132541.7Link to Ensembl Protein Viewer:ENSMUSP00000138471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132541Re-query CCDS DB by Protein ID:ENSMUSP00000138471
Original member Current member EBI ENSMUST00000126119.7 ENSMUSP00000138560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126119.7Link to Ensembl Protein Viewer:ENSMUSP00000138560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126119Re-query CCDS DB by Protein ID:ENSMUSP00000138560
Original member Current member EBI ENSMUST00000146054.7 ENSMUSP00000138605.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146054.7Link to Ensembl Protein Viewer:ENSMUSP00000138605.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146054Re-query CCDS DB by Protein ID:ENSMUSP00000138605
Original member Current member EBI ENSMUST00000130175.7 ENSMUSP00000138675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130175.7Link to Ensembl Protein Viewer:ENSMUSP00000138675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130175Re-query CCDS DB by Protein ID:ENSMUSP00000138675
Original member Current member EBI ENSMUST00000182151.7 ENSMUSP00000138692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182151.7Link to Ensembl Protein Viewer:ENSMUSP00000138692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182151Re-query CCDS DB by Protein ID:ENSMUSP00000138692
Original member Current member EBI ENSMUST00000143047.7 ENSMUSP00000138733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143047.7Link to Ensembl Protein Viewer:ENSMUSP00000138733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143047Re-query CCDS DB by Protein ID:ENSMUSP00000138733
Original member Current member NCBI NM_001163721.1 NP_001157193.1 Accepted alive Link to Nucleotide Sequence:NM_001163721.1Link to Protein Sequence:NP_001157193.1Re-query CCDS DB by Nucleotide ID:NM_001163721Re-query CCDS DB by Protein ID:NP_001157193Link to BLAST:NP_001157193.1
Original member Current member NCBI NM_001163722.1 NP_001157194.1 Accepted alive Link to Nucleotide Sequence:NM_001163722.1Link to Protein Sequence:NP_001157194.1Re-query CCDS DB by Nucleotide ID:NM_001163722Re-query CCDS DB by Protein ID:NP_001157194Link to BLAST:NP_001157194.1
Original member Current member NCBI NM_001357248.1 NP_001344177.1 Accepted alive Link to Nucleotide Sequence:NM_001357248.1Link to Protein Sequence:NP_001344177.1Re-query CCDS DB by Nucleotide ID:NM_001357248Re-query CCDS DB by Protein ID:NP_001344177Link to BLAST:NP_001344177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157193.1 78 P0C8K7 78 100% 0 0
NP_001157194.1 78 P0C8K7 78 100% 0 0
NP_001344177.1 78 P0C8K7 78 100% 0 0

Chromosomal Locations for CCDS 59664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154023327 154023453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154023688 154023797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGCAGTCCCAGGAGAGTGGTGTTCACTACAGCAGGTGGGACAGCAGCAGCCGGGATGAAGTCAGCATGA
CCGCCATGTCCAGCTCGGAAGAAGCCTCATGCTATAGGAGGATCTCCCAGAAGCTGTGCTCTGGCAAGCT
GGGGATAGCCATGAAGGTGCTGGGTGGAGTGGCCCTCTTCTGGATCATCTTCATCCTGGGTTACATCACT
GGCTACTACGTGCACAAGTGCAAATAA

Translation (78 aa):
MQSQESGVHYSRWDSSSRDEVSMTAMSSSEEASCYRRISQKLCSGKLGIAMKVLGGVALFWIIFILGYIT
GYYVHKCK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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