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Report for CCDS22740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22740.1 Public Mus musculus 8 Rnf166 23 108 98 CCDS HistoryNCBI Gene:68718Re-query CCDS DB by CCDS ID:22740.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014614.3 ENSMUSP00000014614.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014614.3Link to Ensembl Protein Viewer:ENSMUSP00000014614.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000014614Re-query CCDS DB by Protein ID:ENSMUSP00000014614
Original member Current member NCBI NM_001033142.3 NP_001028314.1 Accepted alive Link to Nucleotide Sequence:NM_001033142.3Link to Protein Sequence:NP_001028314.1Re-query CCDS DB by Nucleotide ID:NM_001033142Re-query CCDS DB by Protein ID:NP_001028314Link to BLAST:NP_001028314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028314.1 237 Q3U9F6 237 100% 0 0

Chromosomal Locations for CCDS 22740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122467169 122467234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122467962 122468069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122468240 122468354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122468614 122468726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122470200 122470356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122475863 122476017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCGATGTTCCGCAGCCTGGTGGCCTCGGCGCAGCAGCGGCAGCCGCCGGCTGGGCCCGCGGGCGGCG
ACAGCGGCCTGGAGGCGCAGTTCAGCTGTCCCATCTGCCTGGAGGTGTACCATCGGCCAGTGGCCATCGG
CAGCTGCGGCCACACGTTCTGCGGGGAGTGCCTCCAGCCATGTCTGCAGGTGCCGTCCCCTCTGTGCCCA
CTCTGCCGTCTGCCCTTCGACCCCAAGAAAGTGGACAAGGCCACCCATGTAGAGAAGCAACTCTCATCCT
ACAAGGCACCCTGTCGGGGTTGCAACAAGAAGGTGACACTGGCCAAGATGAGAGCGCACATTTCCTCCTG
CCTGAAGGTCCAGGAGCAGATGGCTAACTGCCCCAAATTCGTCCCTGTGGTGCCCACATCTCAGCCCATC
CCCAGCAATATCCCCAACCGGTCTACCTTCGCCTGCCCCTACTGCGGAGCCCGCAATCTGGATCAGCAGG
AGCTGGTGAAGCACTGCGTGGAAAGTCACCGCAGTGATCCCAACCGTGTGGTATGCCCCATCTGCTCAGC
AATGCCCTGGGGGGACCCCAGCTACAAAAGCGCCAACTTCCTGCAGCATCTGCTGCACCGGCACAAGTTC
TCCTACGACACCTTCGTGGACTACAGCATCGACGAAGAAGCTGCCTTCCAGGCTGCCCTGGCTCTGTCCC
TCTCTGAGAACTGA

Translation (237 aa):
MAMFRSLVASAQQRQPPAGPAGGDSGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCP
LCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMANCPKFVPVVPTSQPI
PSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKF
SYDTFVDYSIDEEAAFQAALALSLSEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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