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Report for CCDS38979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38979.1 Public Mus musculus 4 Rere 23 108 98 CCDS HistoryNCBI Gene:68703Re-query CCDS DB by CCDS ID:38979.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105682.8 ENSMUSP00000101307.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105682.8Link to Ensembl Protein Viewer:ENSMUSP00000101307.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105682Re-query CCDS DB by Protein ID:ENSMUSP00000101307
Original member Current member NCBI NM_001085492.1 NP_001078961.1 Accepted alive Link to Nucleotide Sequence:NM_001085492.1Link to Protein Sequence:NP_001078961.1Re-query CCDS DB by Nucleotide ID:NM_001085492Re-query CCDS DB by Protein ID:NP_001078961Link to BLAST:NP_001078961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078961.1 1558 Q80TZ9 1558 100% 0 0

Chromosomal Locations for CCDS 38979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150406340 150406664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150431523 150431593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150439343 150439468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150468695 150468800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150470295 150470391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150477364 150477468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150500003 150500051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150508830 150508954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150509939 150510038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150534847 150534945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150570216 150570296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150610854 150611016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150611987 150612079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150612547 150612746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150613725 150613886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150614140 150614253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150614477 150615831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150615941 150616163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150616759 150617479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150618406 150618552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150619025 150619205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150619456 150619489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4677 nt):
ATGACAGCTGACAAAGATAAAGACAAAGACAAAGAGAAGGACCGGGACCGGGATCGGGACCGAGAAAGAG
ATAAAAGAGACAAAGCAAGAGAGAGCGAGAATGCCAGGCCTCGCAGGAGCTGTACCTTGGAGGGAGGAGC
CAAAAACTATGCTGAGAGCGATCACAGCGAGGACGAAGACAACGACAACAACAGCGCCACCACGGAGGAG
TCCAACAAGAAGAGCAGAAAGAAACCTCCGAAAAAAAAGTCCCGCTACGAGAGGACAGACACTGGTGAGA
TAACTTCTTACATCACCGAGGACGACGTTGTCTACAGACCGGGAGACTGTGTGTATATCGAGAGTCGGCG
GCCAAACACACCGTATTTCATCTGCAGCATCCAAGACTTCAAACTGGTCCACAGCTCCCAGGCCTGTTGC
AGATCTCCAGCTCCTGCTTTCTGTGACCCCCCAGCATGCTCTCTGCCGGTGGCACCACAGCCACCACAGC
ACCTCTCTGAAGCCGGGAGAGGGCCTGGAGGGAGTAAGAGGGACCATCTACTCATGAACGTCAAATGGTA
CTACCGTCAGTCTGAAGTCCCAGATTCTGTCTATCAGCATTTGGTTCAGGATCGGCATAATGAAAACGAC
TCTGGAAGAGAGCTTGTCATCACAGATCCAGTCATCAAGAATCGGGAACTCTTCATTTCTGATTATGTTG
ACACCTACCATGCTGCTGCCCTAAGAGGGAAGTGTAACATCTCCCATTTTTCTGACATATTTGCTGCTCG
AGAGTTTAAAGCCCGAGTGGACTCATTTTTCTACATATTAGGATACAACCCTGAGACAAGGCGGCTGAAT
AGTACCCAAGGGGAAATTCGAGTTGGCCCTAGCCACCAGGCCAAACTTCCAGATCTGCAACCATTTCCTT
CTCCAGATGGTGATACTGTGACTCAGCATGAGGAACTTGTCTGGATGCCTGGAGTCAGTGACTGTGACCT
CCTCATGTACTTGAGGGCAGCAAGGAGCATGGCAGCATTTGCAGGGATGTGTGATGGAGGCTCCACAGAG
GATGGCTGTGTTGCAGCATCTCGGGATGACACCACTCTCAATGCACTGAACACACTACATGAAAGCAGTT
ATGATGCCGGCAAAGCCCTGCAGCGCCTGGTGAAGAAGCCTGTGCCCAAGCTGATCGAGAAGTGCTGGAC
AGAGGATGAAGTGAAACGCTTCGTTAAGGGGCTCCGACAATACGGCAAGAACTTCTTCAGAATCAGAAAG
GAGCTGCTTCCCAGTAAGGAAACCGGGGAACTGATTACCTTCTATTACTACTGGAAGAAAACACCAGAGG
CGGCCAGCTCCCGTGCCCACCGCCGCCACCGCAGGCAGGCGGTGTTCAGAAGAATTAAGACTCGCACAGC
GTCCACCCCTGTCAACACGCCCTCCAGACCACCTTCCAGTGAATTCTTGGACCTGAGTTCAGCTAGTGAG
GATGACTTTGACAGTGAGGACAGCGAACAGGAGCTGAAGGGGTACGCCTGCCGTCACTGCTTCACCACCA
CCTCCAAAGACTGGCACCACGGGGGCCGGGAAAACATCCTACTGTGCACGGACTGTCGCATCCACTTCAA
GAAGTACGGTGAGCTGCCACCCATCGAGAAGCCCGTGGACCCCCCGCCCTTCATGTTCAAGCCTGTCAAG
GAGGAGGACGATGGGCTCAGTGGGAAGCATAGCATGAGGACGCGGCGGAGCCGGGGCTCGATGTCTACAC
TACGCAGTGGTCGGAAGAAGCAGCCCACCAGTCCTGATGGTCGTGCCTCACCCATCAATGAAGACATCCG
ATCCAGTGGCCGGAACTCCCCCAGTGCTGCTAGCACTTCCAGCAATGACAGTAAAGCAGAGACAGTGAAG
AAGTCAGCCAAGAAGGTGAAGGAAGAGGCTGCATCCCCTCTGAAGAGCACCAAGCGCCAGCGGGAGAAGG
TGGCCTCTGACACAGAAGACACTGATAGGATCACCTCCAAAAAGACAAAGACCCAGGAGATTAGCCGTCC
CAACTCTCCCTCTGAAGGAGAGGGGGAGAGTTCGGACAGTCGCAGTGTCAACGATGAGGGCAGCAGTGAC
CCGAAAGACATTGACCAGGATAATCGCAGCACGTCTCCCAGTATCCCCAGCCCTCAGGATAATGAGAGTG
ACTCGGACTCATCAGCACAGCAGCAGATGTTGCAGGCCCAGCCCCCAGCCTTGCAAGCTCCCAGTGGTGC
TGCCTCGGCTCCCTCCACAGCCCCTCCAGGAACACCCCAGCTTCCCACCCAAGGACCCACACCCTCTGCC
ACTGCAGTCCCTCCACAGGGCTCCCCTGCAACCTCACAGCCCCCTAACCAGACTCAGTCTACAGTTGCAC
CTGCAGCCCACACCCACATCCAACAGGCACCCACCCTGCACCCCCCTCGGCTGCCCTCACCTCATCCTCC
ACTGCAGCCTATGACTGCACCGCCTAGCCAGAGCTCTGCACAACCTCACCCCCAGCCCTCCTTGCACAGT
CAGGGCCCGCCTGGCCCTCACAGCCTACAGACTGGACCCCTGTTACAGCACCCAGGACCTCCTCAGCCCT
TTGGACTTCCTTCCCAGCCCTCCCAAGGTCAGGGCCCTCTGGGCCCCTCCCCGGCAGCAGCTCATCCTCA
TAGCACCATACAGCTTCCAGCGTCGCAGTCAGCGCTGCAGCCCCAACAGCCCCCAAGGGAACAGCCCTTG
CCTCCTGCCCCTTTAGCTATGCCTCACATCAAACCCCCACCCACCACACCAATTCCCCAGCTTCCAGCAC
CACAAGCCCACAAACATCCGCCTCACCTCTCAGGCCCCTCCCCCTTCTCTCTGAATGCCAATCTGCCACC
CCCGCCAGCCCTGAAACCCCTGAGCTCACTGTCCACACACCACCCTCCCTCAGCCCACCCTCCACCCTTA
CAACTCATGCCTCAGAGCCAGCCCTTGCCCTCTTCACCTGCCCAGCCACCTGGGCTGACCCAGAGCCAGA
GCCTACCACCTCCTGCTGCCTCCCATCCTACCACTGGCCTCCACCAGGTGCCCTCCCAATCCCCATTTCC
CCAGCACCCTTTCGTACCTGGAGGCCCCCCTCCCATCACCCCGCCCTCCTGCCCCCCCACTTCCACCCCT
CCTGCCGGGCCCAGCTCCTCATCACAGCCACCCTGCTCTGCTGCTGTGTCTTCTGGAGGCAGTGTTCCTG
GGGCGCCATCTTGCCCACTCCCTGCTGTGCAAATCAAGGAGGAGGCTCTGGATGAAGCTGAGGAGCCAGA
GAGCCCTCCTCCACCCCCCAGGAGCCCATCCCCTGAGCCCACTGTAGTGGACACCCCCAGCCATGCCAGC
CAGTCTGCCAGGTTCTACAAACACCTGGACCGGGGCTACAACTCGTGTGCACGGACAGACCTGTACTTCA
TGCCTCTGGCTGGATCCAAACTAGCCAAGAAGAGGGAGGAGGCCATTGAGAAGGCCAAGCGGGAGGCTGA
ACAGAAAGCCCGAGAGGAACGGGAGCGGGAGAAAGAGAAGGAAAAAGAGCGAGAACGGGAGAGAGAGCGG
GAACGGGAGGCAGAGCGCGCTGCTAAGGCATCCAGCTCTGCACATGAAGGCCGTCTTAGTGACCCTCAGC
TCAGTGGCCCGGGTCACATGCGACCCTCCTTCGAGCCACCACCGACCACAATCGCTGCTGTGCCCCCATA
TATTGGGCCTGACACACCTGCCCTCCGGACACTGAGCGAATATGCTCGGCCTCATGTCATGTCTCCCACC
AACCGCAACCACCCCTTCTACATGCCCCTTAATCCCACCGACCCCCTGCTGGCCTACCACATGCCTGGCT
TGTACAATGTTGATCCCACCATCCGCGAGCGGGAGCTCCGAGAGCGCGAGATCAGAGAGCGCGAGATCCG
GGAGCGGGAATTGCGGGAGAGGATGAAGCCAGGCTTTGAGGTGAAGCCCCCAGAGCTGGACCCCCTGCAC
CCAGCCACCAACCCCATGGAGCATTTTGCCCGGCACAGCGCCCTCACCATCCCTCCTGCAGCTGGCCCCC
ACCCCTTTGCCTCTTTCCACCCGGGCCTCAACCCTTTGGAGCGGGAGAGACTGGCACTAGCAGGTCCTCA
GCTGCGGCCTGAGATGAGTTACCCAGACAGACTGGCAGCCGAGCGCATCCATGCTGAGCGTATGGCATCA
CTCACCAGCGACCCCCTGGCACGACTGCAGATGTTTAATGTCACTCCACACCATCACCAGCATTCACACA
TCCACTCCCACCTCCACCTCCACCAGCAGGATCCTCTCCACCAAGGTTCAGCAGGCCCAGTTCACCCCCT
GGTTGACCCCTTGACTGCTGGCCCTCACTTAGCTCGCTTCCCCTATCCCCCGGGCACCCTCCCTAACCCT
CTACTTGGACAGCCCCCTCACGAGCACGAGATGCTGCGCCACCCAGTTTTTGGCACCCCCTATCCCCGAG
ACCTGCCTGGGGCTATTCCACCCCCCATGTCAGCAGCCCACCAGCTTCAGGCCATGCATGCCCAGTCAGC
CGAGCTACAGAGACTAGCCATGGAGCAGCAGTGGCTGCACGGACATCCACACATGCATGGTGGCCATCTG
CCAAGTCAGGAGGATTATTACAGTCGACTGAAGAAAGAAGGTGACAAGCAGTTATAA

Translation (1558 aa):
MTADKDKDKDKEKDRDRDRDRERDKRDKARESENARPRRSCTLEGGAKNYAESDHSEDEDNDNNSATTEE
SNKKSRKKPPKKKSRYERTDTGEITSYITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHSSQACC
RSPAPAFCDPPACSLPVAPQPPQHLSEAGRGPGGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNEND
SGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRRLN
STQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVSDCDLLMYLRAARSMAAFAGMCDGGSTE
DGCVAASRDDTTLNALNTLHESSYDAGKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRK
ELLPSKETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASE
DDFDSEDSEQELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVK
EEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVK
KSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSD
PKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSA
TAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHS
QGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPL
PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPL
QLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPFVPGGPPPITPPSCPPTSTP
PAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHAS
QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKERERERER
EREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPT
NRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLH
PATNPMEHFARHSALTIPPAAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMAS
LTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPNP
LLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHL
PSQEDYYSRLKKEGDKQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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