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Report for CCDS51319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51319.1 Public Mus musculus 4 Dnajc8 23 108 98 CCDS HistoryNCBI Gene:68598Re-query CCDS DB by CCDS ID:51319.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094657.9 ENSMUSP00000092242.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094657.9Link to Ensembl Protein Viewer:ENSMUSP00000092242.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094657Re-query CCDS DB by Protein ID:ENSMUSP00000092242
Original member Current member NCBI NM_172400.3 NP_765988.2 Accepted alive Link to Nucleotide Sequence:NM_172400.3Link to Protein Sequence:NP_765988.2Re-query CCDS DB by Nucleotide ID:NM_172400Re-query CCDS DB by Protein ID:NP_765988Link to BLAST:NP_765988.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_765988.2 253 Q6NZB0 253 100% 0 0

Chromosomal Locations for CCDS 51319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132535586 132535663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132538187 132538288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132541782 132541838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132544056 132544122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132544657 132544751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132546637 132546708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132550377 132550468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132551535 132551610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132553017 132553139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGGCTTCGGGAGAGAGTGGTGCTTCGGGTGGCGGAGGCAGCACAGAGGAGGCATTTATGACCTTCT
ACAGTGAGGTGAAACAAATAGAGAAGAGAGATTCAGTTCTAACATCCAAAAATCAAATTGAAAGATTGAC
TCGTCCTGGTTCCTCTTACTTTAATCTGAACCCATTTGAGGTTCTTCAGATAGATCCTGAAGTGACAGAT
GAAGAAATAAAAAAGAGGTTTCGTCAGTTGTCCATCCTGGTGCATCCTGACAAAAACCAGGACGATGCTG
ACAGAGCACAGAAGGCTTTTGAAGCTGTGGACAAAGCTTACAAGTTGCTACTGGATCAGGAACAAAAGAA
GAGGGCCCTGGATGTAATTCAGGCAGGAAAAGAATACGTGGAACACACTGTTAAAGAGCGAAAAAAACAA
CTGAAGAAGGAAGGAAAGCCTACAAATGTGGAGGAAGATGATCCCGAACTGTTCAAACAGGCAGTCTACA
AACAGACCATGAAGCTGTTTGCTGAGCTGGAGATTAAAAGGAAAGAGAGAGAAGCCAAAGAAATGCATGA
GAGGAAGCGACAGAGAGAAGAGGAGATCGAAGCCCAGGAAAAAGCCAAGCGAGAAAGAGAGTGGCAGAAA
AACTTTGAGGAAAGTCGGGATGGTCGAGTGGACAGTTGGCGAAATTTCCAGGCAAATACAAAGGGGAAGA
AGGAGAAGAAGAATCGGACCTTCCTGCGGCCACCGAAAGTCAAGATGGAGCAGCGGGAGTGA

Translation (253 aa):
MAASGESGASGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTD
EEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQ
LKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQK
NFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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