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Report for CCDS19309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19309.1 Public Mus musculus 5 Smim14 23 108 98 CCDS HistoryNCBI Gene:68552Re-query CCDS DB by CCDS ID:19309.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121661.7 ENSMUSP00000113456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121661.7Link to Ensembl Protein Viewer:ENSMUSP00000113456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121661Re-query CCDS DB by Protein ID:ENSMUSP00000113456
Original member Current member EBI ENSMUST00000139122.7 ENSMUSP00000122363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139122.7Link to Ensembl Protein Viewer:ENSMUSP00000122363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139122Re-query CCDS DB by Protein ID:ENSMUSP00000122363
Original member NCBI NM_133697.3 NP_598458.1 Updated not alive Link to Nucleotide Sequence:NM_133697.3Link to Protein Sequence:NP_598458.1Re-query CCDS DB by Nucleotide ID:NM_133697Re-query CCDS DB by Protein ID:NP_598458
Current member NCBI NM_133697.4 NP_598458.1 Accepted alive Link to Nucleotide Sequence:NM_133697.4Link to Protein Sequence:NP_598458.1Re-query CCDS DB by Nucleotide ID:NM_133697Re-query CCDS DB by Protein ID:NP_598458Link to BLAST:NP_598458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598458.1 99 Q91VT8 99 100% 0 0

Chromosomal Locations for CCDS 19309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65450405 65450437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65453186 65453328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65460524 65460572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65468393 65468467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCTGAAGGAGGATTTGACCCCTGTGAATGTGTCTGCTCTCACGAACATGCTATGAGGAGGCTCATCA
ATCTGCTCCGGCAGTCCCAGTCCTACTGCACCGACACAGAGTGCCTTCGGGAGTTGCCAGGACCCTCCAG
TGACAGTGGCATCAGCATCACTGTGATCCTGATGGCCTGGATGGTGATCGCCATGCTCCTCTTCCTTCTG
AGGCCTCCTAACCTGAGAGGCTCCAGCCTCCCTGGAAAGCCCTCCAGTCCTCACAGTGGACAGGACCCGC
CAGCCCCTCCCGTGGACTAA

Translation (99 aa):
MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSSDSGISITVILMAWMVIAMLLFLL
RPPNLRGSSLPGKPSSPHSGQDPPAPPVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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