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Report for CCDS79793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79793.1 Public Mus musculus 2 Arhgap15 23 108 98 CCDS HistoryNCBI Gene:76117Re-query CCDS DB by CCDS ID:79793.1Re-query CCDS DB by GeneID:76117See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112824.7 ENSMUSP00000108443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112824.7Link to Ensembl Protein Viewer:ENSMUSP00000108443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112824Re-query CCDS DB by Protein ID:ENSMUSP00000108443
Original member Current member NCBI NM_001301831.1 NP_001288760.1 Accepted alive Link to Nucleotide Sequence:NM_001301831.1Link to Protein Sequence:NP_001288760.1Re-query CCDS DB by Nucleotide ID:NM_001301831Re-query CCDS DB by Protein ID:NP_001288760Link to BLAST:NP_001288760.1

Chromosomal Locations for CCDS 79793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 43748889 43748899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43780617 43780794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43828695 43828763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43844750 43844811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43856806 43856893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43890428 43890517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44063762 44063860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44064984 44065107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44116594 44116716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44142250 44142348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44176371 44176448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44243105 44243239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44322676 44322781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44388352 44388497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44394309 44394334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACAAACTGTGACAACTCTCTGGAAATACTGAATT
CTGCCCACCAAGCTACAGGAGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCAAGACAGGCAGAG
CCAAACTAAATCCATGATCCTCACCGATGCTGGGAAGGTCACTGAACCTATTTCCCGGCACAGAAGGAAT
CATTCACAGCATGTGTTGAAAGATGTCATTCCACCACTAGAACATCCAATGGTTGAAAAAGAAGGGTATC
TTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCT
TTCTGGTCGAAAAATTGAATTTTACAAAGACTCCAAGCAGCAAGCTCTTCCTAACATGAAAACCAGGCAC
AACGTGGAAAGTGTGGATTTGTGTGGTGCACATATAGAATGGGCCAAAGAAAAATCAAGCAGAAAGAGTG
TCTTTCAGATCACAACAGTGTCAGGAAATGAGTTCCTTCTACAGTCAGATATTGACTTCCTCATATTGGA
TTGGTTCCAAGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTGTGGGTCCCTGGAGTTG
TTCAATTTGCAGAGATCCTCAAGTTCTGAACTGCCGAGTCACTGCCACATCGATAGAAAAGAACAGAAAC
CAGAACACAGGAAGTCCTTCATGTTTCGACTGCACCACAGTGCTTCTGATACAAGTGACAAGAATCGCGT
GAAGAGCAGACTGAAGAAGTTCATCTCCAGAAGACCTTCTCTGAAAACTTTGCAGGAAAAGGGACTCATT
AAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGGTTTG
TAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGACGTTGATGGAATTTATCGAGTTAGTGGCAA
TCTTGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAG
TGGGAGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAACCGCTCTTCC
CTTACAGTTTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGCAATGAAAAAATTGAAACTAT
GAGGTCTCTGGTAAAACGTCTCCCTCCACCAAATCATGATACCATGAAAATCCTCTTCAGACATCTAACC
AAATTCATAATCTTCAAACGCACCAGCTTCTTGATTTCCAATCAGATGGGATTTAGCCTGATCCAGACCC
CAGCTGTGTCCTGTTCCTGCCTACTAAGGGCACTGCATCAGAGAACATGTTTTCTCTCTAGAGGGAGACC
TTTCCAAGACCCTGCCTCCCAACTCTCCCTTTAA

Translation (477 aa):
MEKRTSCSVQTSTNCDNSLEILNSAHQATGAVQMRIKNANSHQDRQSQTKSMILTDAGKVTEPISRHRRN
HSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKIEFYKDSKQQALPNMKTRH
NVESVDLCGAHIEWAKEKSSRKSVFQITTVSGNEFLLQSDIDFLILDWFQAIKNAIDRLPKNPSCGSLEL
FNLQRSSSSELPSHCHIDRKEQKPEHRKSFMFRLHHSASDTSDKNRVKSRLKKFISRRPSLKTLQEKGLI
KDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQ
WEDIHVVTGALKMFFRELSEPLFPYSFFERFVEAIKKQDSNEKIETMRSLVKRLPPPNHDTMKILFRHLT
KFIIFKRTSFLISNQMGFSLIQTPAVSCSCLLRALHQRTCFLSRGRPFQDPASQLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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