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Report for CCDS28677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28677.1 Public Mus musculus 17 Ly6g6c 23 108 98 CCDS HistoryNCBI Gene:68468Re-query CCDS DB by CCDS ID:28677.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173478.1 ENSMUSP00000133510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173478.1Link to Ensembl Protein Viewer:ENSMUSP00000133510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173478Re-query CCDS DB by Protein ID:ENSMUSP00000133510
Original member Current member NCBI NM_023463.3 NP_075952.1 Accepted alive Link to Nucleotide Sequence:NM_023463.3Link to Protein Sequence:NP_075952.1Re-query CCDS DB by Nucleotide ID:NM_023463Re-query CCDS DB by Protein ID:NP_075952Link to BLAST:NP_075952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075952.1 126 Q9Z1Q4 126 100% 0 0

Chromosomal Locations for CCDS 28677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35067390 35067444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35068867 35068977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35069320 35069534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGAAACACCTCCTGTTGCTCACCCTGTCTGCCCTACTCTACTGCTGGGTCTCAGCTGATACTCGATGTC
ACTCCTGCTACAAAGTCCCTGTGCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAA
ATGCCTGACAACAAACGTGTACCTTGGGAAGATGTGGGTTTTCTCTAACCTGCGCTGCGGCACACCAGAA
GAGCCTTGTCGGGAGGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAACTACAACACCACCTGCTGTG
ACAAGGATAACTGTAACAGCCCGGCTCCACGGCCCACACCCGCACTGGCCCTCATCTCCCTCACCTCCTT
GGCTGGCCTCGGCCTCTGGTTATTGCATTGA

Translation (126 aa):
MKHLLLLTLSALLYCWVSADTRCHSCYKVPVLGCVDRQSCRLEPGHKCLTTNVYLGKMWVFSNLRCGTPE
EPCREVFNETNHKLGLNYNTTCCDKDNCNSPAPRPTPALALISLTSLAGLGLWLLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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