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Report for CCDS24151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24151.1 Public Mus musculus 10 Rlig1 23 108 98 CCDS HistoryNCBI Gene:68281Re-query CCDS DB by CCDS ID:24151.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054471.9 ENSMUSP00000062410.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054471.9Link to Ensembl Protein Viewer:ENSMUSP00000062410.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054471Re-query CCDS DB by Protein ID:ENSMUSP00000062410
Original member Current member NCBI NM_175128.2 NP_780337.2 Accepted alive Link to Nucleotide Sequence:NM_175128.2Link to Protein Sequence:NP_780337.2Re-query CCDS DB by Nucleotide ID:NM_175128Re-query CCDS DB by Protein ID:NP_780337Link to BLAST:NP_780337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780337.2 327 Q8BHN7-1 327 100% 0 0

Chromosomal Locations for CCDS 24151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100573566 100573760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100575717 100575886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100577161 100577358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100578315 100578431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100583914 100584009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100586191 100586308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100589027 100589116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGAAGCGCCTGGGCTCGGTGCAGCGGAAGATGCCGTGTGTGTTTGTGACGGAGGTGAAAGCTGAGCCTT
CAGCCAAGCGGGAGCATCAGCCATTTAAAGTTTTGGCAACTGAAACTCTAAGTGAAAAGGCGTTAGATGC
AGACGTGTACAATGCGGTTGCAACAGAAAAAGTGGATGGAACATGCTGCTATGTTACTAACTACAAAGGT
CAGCCATACCTTTGGGCTCGACTAGATAGAAAACCTAACAAGCAGGCTGACAAGAGATTTAAAAAATTTC
TACATTCAAAAGAAAGTGCAAAAGAGTTTCACTGGAACACTGAGGAAGACTTCAAGCCTGTCCCAGAGTG
CTGGATACCAGCAAAGGAAATAGAAAAACAAAACGGGAAGCCAGTGCCTGATGAAAACGGACACATCCCT
GGTTGGGTACCAGTAGAGAAGGGCAGCAAGCAATATTGCTGGCACTCGTCGGTAGTGAATTACGAGTTTG
GAATTGCCCTGGTACTAAGGCACCATCCTGATGATCCCGGGGTTTTGGAAATTAGTGCTGTTCCCCTGTC
AGAGCTTTTAGAGCAAACCCTGGAGCTGATAGGCACGAGTATCAATGGAAACCCCTATGGGCTGGGAAGC
AAGAAATCCCCGTTACATTTTCTCACACCACACGGAGCATTCCAGGTCAGAAATCTGCCCACACTGAAAC
ACAATGACCTGCTGTCCTGGTTTGAAGACTGCAGAGAGGGTCAAATTGAAGGGATTGTGTGGCATTGCGG
TGACGGCTGTTTAATTAAGGTCCATCGTCACCATCTTGGTTTATGCTGGCCACTTCCAGATACTTACATG
AATTCCAAACCAGTTATTATTAACATGAACCTGAACCTGAACAATTATGACTGTGCTTTTGATAACCAGT
CTTTGTTTAATCAGTTTTCAAAAATAGATAAACAGAAATTTGAGAGACTCAAAGACATAATACTTGATGT
ATAA

Translation (327 aa):
MKRLGSVQRKMPCVFVTEVKAEPSAKREHQPFKVLATETLSEKALDADVYNAVATEKVDGTCCYVTNYKG
QPYLWARLDRKPNKQADKRFKKFLHSKESAKEFHWNTEEDFKPVPECWIPAKEIEKQNGKPVPDENGHIP
GWVPVEKGSKQYCWHSSVVNYEFGIALVLRHHPDDPGVLEISAVPLSELLEQTLELIGTSINGNPYGLGS
KKSPLHFLTPHGAFQVRNLPTLKHNDLLSWFEDCREGQIEGIVWHCGDGCLIKVHRHHLGLCWPLPDTYM
NSKPVIINMNLNLNNYDCAFDNQSLFNQFSKIDKQKFERLKDIILDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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