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Report for CCDS25317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25317.1 Public Mus musculus 11 Npepps 23 108 98 CCDS HistoryNCBI Gene:19155Re-query CCDS DB by CCDS ID:25317.1Re-query CCDS DB by GeneID:19155See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001480.13 ENSMUSP00000001480.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001480.13Link to Ensembl Protein Viewer:ENSMUSP00000001480.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001480Re-query CCDS DB by Protein ID:ENSMUSP00000001480
Original member Current member NCBI NM_008942.3 NP_032968.2 Accepted alive Link to Nucleotide Sequence:NM_008942.3Link to Protein Sequence:NP_032968.2Re-query CCDS DB by Nucleotide ID:NM_008942Re-query CCDS DB by Protein ID:NP_032968Link to BLAST:NP_032968.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032968.2 920 Q11011 920 100% 0 0

Chromosomal Locations for CCDS 25317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97207116 97207268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97212280 97212327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97213032 97213187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97213771 97213878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97217791 97217847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97218508 97218650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97222951 97223170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97224659 97224793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97226729 97226868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97229830 97229893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97231889 97231998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97235055 97235115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97236065 97236169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97238094 97238258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97240929 97241043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97241804 97241837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97241951 97242047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97242603 97242803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97244428 97244535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97248202 97248323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97258274 97258351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97267595 97267679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97280201 97280458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGTGGCTGGCAGCCGCCGTCCCCTCCCTCGCTCGCCGCCTGCTCCTCCTCGGCCCTCCGCCTCCTCCCC
TCCTTCTCCTCCTCAGCCGCTCCTCTCGCCGCCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCC
GGAGAAGCGGCCCTTCGAGCGGCTGCCCGCCGAGGTGTCGCCCATCAACTACAGCCTCTGCCTCAAGCCC
GATTTGCTGGACTTCACCTTCGAGGGCAAGCTGGAGGCCGCCGCCCAGGTAAGGCAGGCAACCAATCAAA
TTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCCCCAGAAGGAGATGAAGAAATCCA
TGCGACAGGATTTAACTATCAGAATGAAGATGAGAAAGTCACCTTGTCTTTTCCTAGCACTCTGCAAACA
GGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGCA
GATACACCACCCCTGCCGGCGAGGTGCGCTATGCTGCTGTCACACAGTTTGAGGCTACTGATGCCCGAAG
GGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAACTTTTGATATCTCGCTGGTTGTGCCTAAAGAC
AGAGTGGCTTTATCAAATATGAATGTAATTGACAGGAAACCATATCCTGATGATGAAAATTTAGTGGAAG
TGAAGTTTGCTCGCACACCTGTTATGTCTACGTATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGT
AGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAG
TTTGCGCTCGAGGTTGCTGCTAAGACCTTGCCTTTTTATAAAGACTACTTCAATGTTCCTTATCCTCTAC
CTAAAATTGATCTCATTGCTATTGCTGACTTTGCAGCTGGTGCCATGGAGAACTGGGGCCTTGTTACTTA
TAGGGAAACGGCCTTGCTTATTGATCCAAAAAACTCGTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTT
GTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGAATGGTGGACTCATCTCTGGT
TGAATGAAGGCTTTGCATCCTGGATTGAGTATCTTTGTGTAGACCACTGCTTTCCAGAGTATGATATCTG
GACTCAGTTTGTTTCTGCAGATTATACCCGTGCCCAGGAACTTGATGCCTTAGATAACAGCCATCCTATT
GAAGTCAGTGTGGGCCATCCGTCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCAT
CTGTAATCCGAATGCTACATGACTACATTGGTGATAAGGACTTTAAGAAAGGAATGAATATGTATTTAAC
CAAGTTCCAACAAAAGAATGCTGCCACAGAGGATCTCTGGGAAAGTTTGGAAAGTGCCAGTGGCAAACCC
ATAGCAGCTGTGATGAATACCTGGACCAAACAAATGGGATTCCCTCTCATTTATGTGGAAGCTGAACAGG
TAGAAGATGACAGAGTGCTGAAGCTGTCTCAGAAGAAGTTTTGTGCCAGTGGACCATATGGCGGTGAAGA
CTGTCCTCAGTGGATGGTTCCTATCACAATTTCAACTAGTGAGGATCCTAACCAGGCTAAGCTGAAAATA
CTAATGGATAAGCCAGAGATGAGTGTGGTTTTGAAAAATGTCAAACCAGACCAATGGGTAAAGCTAAATC
TGGGAACAGTTGGGTTTTATCGAACCCAGTACAGCTCTGCCATGCTCGAAAGTTTATTACCAGGCATCCG
TGACCTTTCTCTGCCCCCAGTGGATCGACTTGGATTACAGAATGACCTCTTTTCTCTGGCTCGAGCTGGC
ATCATTAGCACTGTAGAGGTTCTAAAAGTCATGGAGGCTTTTGTGAATGAGCCCAATTATACTGTATGGA
GCGACCTGAGCTGTAACCTGGGGATTCTTTCAACTCTCTTGTCCCACACAGACTTCTATGAGGAAATCCA
GGAGTTTGTCAAAGATGTCTTTTCACCTATAGGAGAGAGATTGGGCTGGGACCCCAAACCTGGAGAAGGT
CATCTAGACGCACTCCTGAGGGGCTTGGTGCTGGGCAAACTGGGAAAAGCAGGCCATAAGGCAACTTTGG
AAGAAGCCCGTCGTCGGTTTAAGGAGCACGTGGAAGGGAAACAGATTCTTTCTGCTGACCTAAGGAGTCC
TGTCTATCTCACTGTTTTAAAGCATGGGGATGGCGCTACCTTAGATATCATGCTGAAGCTTCACAAACAA
GCTGATATGCAAGAAGAGAAAAACAGAATTGAAAGAGTTCTTGGGGCTACTCTTTCACCTGAACTGATTC
AAAAAGTCCTTACTTTTGCACTTTCAGAAGAGGTCCGTCCGCAGGACACTGTGTCGGTGATTGGTGGAGT
GGCTGGAGGCAGCAAGCATGGGAGGAAAGCTGCTTGGAAATTCATCAAGGACAACTGGGAGGAGCTTCAC
AACCGGTACCAGGGAGGGTTCTTAATATCCAGACTAATAAAGCTCTCAGTTGAGGGGTTTGCAGTTGATA
AAATGGCTGGAGAAGTTAAGGCTTTCTTCGAGAGTCACCCAGCTCCTTCAGCTGAGCGCACCATCCAGCA
GTGTTGTGAAAATATCCTGTTGAATGCTGCTTGGCTCAAGCGAGATGCTGACAGCATTCACCAGTACCTC
CTTCAGCGGAAAACCTCCCCACCCTCGGTGTGA

Translation (920 aa):
MWLAAAVPSLARRLLLLGPPPPPLLLLLSRSSRRRRRLHSLGLAAMPEKRPFERLPAEVSPINYSLCLKP
DLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEEIHATGFNYQNEDEKVTLSFPSTLQT
GTGTLKIDFVGELNDKMKGFYRSRYTTPAGEVRYAAVTQFEATDARRAFPCWDEPAIKATFDISLVVPKD
RVALSNMNVIDRKPYPDDENLVEVKFARTPVMSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGK
FALEVAAKTLPFYKDYFNVPYPLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALV
VGHELAHQWFGNLVTMEWWTHLWLNEGFASWIEYLCVDHCFPEYDIWTQFVSADYTRAQELDALDNSHPI
EVSVGHPSEVDEIFDAISYSKGASVIRMLHDYIGDKDFKKGMNMYLTKFQQKNAATEDLWESLESASGKP
IAAVMNTWTKQMGFPLIYVEAEQVEDDRVLKLSQKKFCASGPYGGEDCPQWMVPITISTSEDPNQAKLKI
LMDKPEMSVVLKNVKPDQWVKLNLGTVGFYRTQYSSAMLESLLPGIRDLSLPPVDRLGLQNDLFSLARAG
IISTVEVLKVMEAFVNEPNYTVWSDLSCNLGILSTLLSHTDFYEEIQEFVKDVFSPIGERLGWDPKPGEG
HLDALLRGLVLGKLGKAGHKATLEEARRRFKEHVEGKQILSADLRSPVYLTVLKHGDGATLDIMLKLHKQ
ADMQEEKNRIERVLGATLSPELIQKVLTFALSEEVRPQDTVSVIGGVAGGSKHGRKAAWKFIKDNWEELH
NRYQGGFLISRLIKLSVEGFAVDKMAGEVKAFFESHPAPSAERTIQQCCENILLNAAWLKRDADSIHQYL
LQRKTSPPSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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