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Report for CCDS29450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29450.1 Public Mus musculus 19 Yif1a 23 108 98 CCDS HistoryNCBI Gene:68090Re-query CCDS DB by CCDS ID:29450.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025811.5 ENSMUSP00000025811.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025811.5Link to Ensembl Protein Viewer:ENSMUSP00000025811.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025811Re-query CCDS DB by Protein ID:ENSMUSP00000025811
Original member Current member NCBI NM_026553.4 NP_080829.1 Accepted alive Link to Nucleotide Sequence:NM_026553.4Link to Protein Sequence:NP_080829.1Re-query CCDS DB by Nucleotide ID:NM_026553Re-query CCDS DB by Protein ID:NP_080829Link to BLAST:NP_080829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080829.1 293 Q91XB7 293 100% 0 0

Chromosomal Locations for CCDS 29450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5088718 5088748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5089419 5089630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5089772 5089876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5090004 5090082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5091368 5091425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5091541 5091696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5092129 5092222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5092302 5092448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTC
CACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGT
AGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATA
GCATCCCAAGGGAAGGACATAGTGCACAAAGAGCTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATT
TTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAGAA
CTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTAT
ATCCCCACCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAGGTTCT
CCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCT
TCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTAC
AAATATGTGGGGATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCC
TGGCCTGGACATCATCTGCGCTTATGTACTTCATTGTACGATCTTTGCGGACTGCAGCTTCAGGCCCTGA
CAGCATGGGGGGCCCAGCCCCTCGGCAGCGTCTCCAGCTCTACCTGACCCTGGGAGCAGCTGCCTTCCAG
CCCCTCATCATATACTGGCTGACCTTCCACCTGGTCCGGTGA

Translation (293 aa):
MAYHSAYGVHGSKHRTRAAPDPPPLFDDTSGGYSSQLGGYPAPGADVAFSVNNLLGDPVANMAMAYGTSI
ASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKMQYSHDVPLPPRKDLNAPDLY
IPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWVFMEVLALLLGLYLATVRSELSTFHLLAYSGY
KYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAASGPDSMGGPAPRQRLQLYLTLGAAAFQ
PLIIYWLTFHLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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