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Report for CCDS23174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23174.1 Public Mus musculus 9 Fdxacb1 23 108 98 CCDS HistoryNCBI Gene:382137Re-query CCDS DB by CCDS ID:23174.1Re-query CCDS DB by GeneID:382137See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042391.12 ENSMUSP00000037082.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042391.12Link to Ensembl Protein Viewer:ENSMUSP00000037082.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042391Re-query CCDS DB by Protein ID:ENSMUSP00000037082
Original member Current member NCBI NM_198675.2 NP_941077.2 Accepted alive Link to Nucleotide Sequence:NM_198675.2Link to Protein Sequence:NP_941077.2Re-query CCDS DB by Nucleotide ID:NM_198675Re-query CCDS DB by Protein ID:NP_941077Link to BLAST:NP_941077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941077.2 622 Q3UY23-1 622 100% 0 0

Chromosomal Locations for CCDS 23174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50768284 50768455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50768688 50768844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50770110 50770313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50770632 50770790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50771431 50772607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGCTTCCCCGGCGCCTCCTGTTGGTCGGGGAGGGGAATTTCTCCTTCGCCGCTTCTCTGATCGACGGCC
TGGATCCCAGCGTCAGTGTTACCGCTACCGGCTTCCAGCACCGGGCGGCTCTGGAGGGAGATCCGGTAGC
GCTAGAGAACCTAAAGCGCCTGCGCGAACGAGGTGTCGAAGTGCGTTTTGGTGTGGACTGTACCCAGCTG
TCACATGCCTTGCCAGCCGACGATAGGGATTTTGATCGAATTTATTTCAACTTCCCGCACTGTGGACGAA
AAGCTGGAGTAGCTAAGAACAGGGAACTGCTTGCCAAGTTTTTCCAGAGCTGTGCTGATGTCCTTGCAAA
GGCAGGAGAAGTCCATGTGACACTGTGCAGAGGACAAGGTGGAACGCCTGCTGACAAGCCTCAGAGAGAG
TGGCACAACAGTTGGCAAGTAGTTGCCATGGCAGCCCTGGGAGGGTTCATTTTAAGTGATGTGTGTCCCT
TTAGCTGTGAGGCTGTGCCAGGATACAAGTGCACTGGGTATAGGAGCCAGGATAGGCCCTTTCACATAGA
AGGTGCTTTGACCTATATCTTCACCCAGAGCTTACCCTTTGAGAGCTGTCAGCCCAGAACTTTCAGAGTC
AGACTGGAGGACCGGTGGTTTTACTTTACAGAACCAGAAGCACTTCCAGGAAAGCTGAACAGGAGGTTCC
TTGAAGCATCTTCCTGTCATCCTATCAGAACCATCAATGAGAAACTCATTGCCGAATTGGGCAAAACTTT
TCCCTTAAAAAGGCTGAAGTGTCCCCTCCCTTTGTTGTCACGGGGAGGCCCCAGTGTCTTCCTACCAGCG
ACCTGTGACCTCCTGCCTACCTTTTGGATTCGTCTACATGAAGATAACTCATGTTCTGAGTTCCAGAATG
GTGAAATAACACAAGAAATGGAAGAAATTCCTGTGTCAGTTTCAGAATGTACCCTTCCGGAGAGTCCTGT
GAGAGATGGCTGCAAAGGTGCTCAGGAGGGAATCTGTGGCCGGGTCAAGCTTGGCCTCAGGCCTTCTCTT
CTTGTTCATGTTGAAGCTGTCATCCATTCCCCAGACTTCCTCCCAGCCTCTCTGCATGTCCTCAGTGGAC
CTGTCTTTCGGAAGTGCCACATCTTACCTTTCATGATGCCAGCATTTCACGAGACTTTATTCATCCTTGG
ATTTGATAACAATATGAAGGAGAGTTGCCTTCCGTCGCTGCTGGGTCACCTGAAGGATGCTCTGGGTAAC
CTTCTGACTCAGACATTGCAGGAGGGCTCTAGTTTGGGCACTTCGGTGGAATTTGTCCTTCAACCAAACG
GAAAGGATTATATAATTCATGTGAAGTCTCTTAATTTTGGCCCAGATTGTGCTGAGAATCTGATTATTGG
ATCTATTCTCACATCTAAGATTGTTAAACATAAGCATCAGTGTTTCGTGTTTGTTTCTATAAACTTGGAC
TTATTAGTTATGCTTGCCTATGGTATTTCTGATTGGAGAATTTTGTGGACTTTTGATAACCGTTTCCTGA
AGAGATTTGCCCCTGGGAAAATAGAACACTTTAAAAGCTATTCTCTGTATCCGCCCTGCTATGTGCATGA
CGTTAGTTTCTGGGTAGATGAAAAGAAAGCATTTGATGAACTGGAGTTTCACACTGTGGCCCGAGCGGTG
TCTCAGGACACTGTCGTGTCTGTACAGTACCGTGATCGTTTTCAGCATCCAGAGACTCGGCAGGTCAGTC
TCTGCTATAGACTGACCTATCAGACTTGTGATAAGGCTCTCACCCCACAGCTGGCAGCAGCAATGCAGTC
CCAGTTCAGAAAAGAGATTCAAAGACAGCTACATGTTTCACCTCGATAG

Translation (622 aa):
MLPRRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGDPVALENLKRLRERGVEVRFGVDCTQL
SHALPADDRDFDRIYFNFPHCGRKAGVAKNRELLAKFFQSCADVLAKAGEVHVTLCRGQGGTPADKPQRE
WHNSWQVVAMAALGGFILSDVCPFSCEAVPGYKCTGYRSQDRPFHIEGALTYIFTQSLPFESCQPRTFRV
RLEDRWFYFTEPEALPGKLNRRFLEASSCHPIRTINEKLIAELGKTFPLKRLKCPLPLLSRGGPSVFLPA
TCDLLPTFWIRLHEDNSCSEFQNGEITQEMEEIPVSVSECTLPESPVRDGCKGAQEGICGRVKLGLRPSL
LVHVEAVIHSPDFLPASLHVLSGPVFRKCHILPFMMPAFHETLFILGFDNNMKESCLPSLLGHLKDALGN
LLTQTLQEGSSLGTSVEFVLQPNGKDYIIHVKSLNFGPDCAENLIIGSILTSKIVKHKHQCFVFVSINLD
LLVMLAYGISDWRILWTFDNRFLKRFAPGKIEHFKSYSLYPPCYVHDVSFWVDEKKAFDELEFHTVARAV
SQDTVVSVQYRDRFQHPETRQVSLCYRLTYQTCDKALTPQLAAAMQSQFRKEIQRQLHVSPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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