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Report for CCDS49409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49409.1 Public Mus musculus 14 Fam149b 23 108 98 CCDS HistoryNCBI Gene:105428Re-query CCDS DB by CCDS ID:49409.1Re-query CCDS DB by GeneID:105428See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090499.12 ENSMUSP00000087985.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090499.12Link to Ensembl Protein Viewer:ENSMUSP00000087985.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090499Re-query CCDS DB by Protein ID:ENSMUSP00000087985
Original member NCBI NM_001024512.2 NP_001019683.1 Updated not alive Link to Nucleotide Sequence:NM_001024512.2Link to Protein Sequence:NP_001019683.1Re-query CCDS DB by Nucleotide ID:NM_001024512Re-query CCDS DB by Protein ID:NP_001019683
Current member NCBI NM_001024512.3 NP_001019683.1 Accepted alive Link to Nucleotide Sequence:NM_001024512.3Link to Protein Sequence:NP_001019683.1Re-query CCDS DB by Nucleotide ID:NM_001024512Re-query CCDS DB by Protein ID:NP_001019683Link to BLAST:NP_001019683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019683.1 578 Q6NSV7-1 578 100% 0 0

Chromosomal Locations for CCDS 49409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20348348 20348394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20351312 20351416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20352704 20352839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20356355 20356497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20358024 20358140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20359755 20359916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20363263 20363450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20374330 20374454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20375510 20375613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20377775 20377999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20378400 20378523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20378764 20378883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20381749 20381821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20382917 20382984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGATCTCCAGATACACTCGGAAGGCCGTGCCGCAGAGCGTGGAGCTGAAAGGACTAACAAAGCACGCTC
TTAACCACCACCCCCTTCCAGAGCGACTGGATGACATTTCCTCTACCAACAACAGCCATGGAAAAGATAC
AAGTTCTCACAGTGAATCTGACATCACCCAAGAATCACCCATTACATCAACTGACACTGGGAATTCGAAT
TCGCGTTCTGCTTTTCCAAGCTACGCAGGCACAGGGGTCTCAACAGAAGGCAGCTCCGACTTCTCTTGGG
GATATGGTGAACTTGACCAGAATGCCACTGAGAAAGTGCAGGCCATGTTTACAGCCATCGACGAGCTCCT
GTATGAGCAGCAGCTGAGCGCACACACACAGGGCCTGCAGAAAGAGTGCCAGCAGTGGGCGGCCAGCTTC
CCTCACCTCAGGATTCTGGGTAGGCAGATAATTACTCCGAGTGAAGGCTATGGATTGTACCCTCGATCCC
CTTCTGCTGTGTCAGCTTCACATGAAGCAACCTTGTCTCAAGAAAGAGAGTCTACCATATTTGGTATAAG
GGGAAAGAAGTTACATTTTTCATCTTCTTATAAACCATCCCCCACCATCAAAGCCTCCGGCTTGTGTGCA
GTTGGAGGAGAGGAGGCAGACTGTATAATCTTTTCTGAAGGGGTAATCGAGGAGTACCTAGCTTTTGACC
ACACGGATATGGAAGAGGGATTTCATGGAAACAAATCAGAAGCAGCTACAGAGAAACAGAAGTTAGGGTA
CCCTCCCATTGCGCCATTTCACTGCATGAAAGAGGATGTTCTTGCTCATGTGTTTGACAACGTGTGGAGC
AAGGCTGTGGGCTGTATGGAGCAGTTGACGCGTAGTCACTGGGAGGGATGTGCTTCTGATGATGAGAGTA
ACGTTGAAATTACCAGACTGGATTCAGGAAGTCCCTATGTGCTGAACGAACAGCATCCTTTGGTCTTACC
TCGAGTGCCGCAGTCTAAAGTGCCGTCTATCACCTCAAGTCCGATGAGTTTCTGTCAAGCAAGCGGTCAT
CAGCCAAACGTGAGTGGCCTCTTGATTCATGGGATGCCTCTACAGCCAAGGAATCTCTCCCTGATGGACA
AGCTCCTAGATCTTGATGACAAGCTACTTACGAGGCCTGGGTCCAGTTCCGTCCTTTCAAACCGAAATTG
GCCAAACCGTGCCATGGAGCTTAGTACATCATCTTTGTCATATACAACGCAGTCTGCCAGGAGGCGCAAT
CCCCCACCACGTACCCTTCATCCGATCAGCACAAGCCACTCACGCGCTGGAACACCATGGCCTGTAGAAG
AAATCCTCAGAGGACCCCGGGTTCCAGTGACAGCAGACACACTGTCTTCTCCCTCTCCAATGACCTTGGG
TCGGAACAATCTGCTGCCACCTATTGGAACAGTTGAAGTAGAACACCTGAGCGCCATGGGGCCACAGCGG
CCAACAAAATCCCATGGTGACTCCAGCCGAGCCCGAAGTGCAGTGGTAGACGAGCCTAACCAGCAGCCCC
AAGAGAGGCTCCTTTTGCCTGTCTTCTCTAGACCCAACACAACTCAGTCGTTTCTGCCAGACACACAGTA
CCGAAGTTCATGTGCATCTGAGTATCCTCATCAGGCCCGACCTGGCAGGGGCTCTGCAGGTCCTCAGTCA
CATGGGTCTACAAAACCTCAGAGCAGAGGTGGACCCATCTCTAGAACCAGGCAATGA

Translation (578 aa):
MISRYTRKAVPQSVELKGLTKHALNHHPLPERLDDISSTNNSHGKDTSSHSESDITQESPITSTDTGNSN
SRSAFPSYAGTGVSTEGSSDFSWGYGELDQNATEKVQAMFTAIDELLYEQQLSAHTQGLQKECQQWAASF
PHLRILGRQIITPSEGYGLYPRSPSAVSASHEATLSQERESTIFGIRGKKLHFSSSYKPSPTIKASGLCA
VGGEEADCIIFSEGVIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFHCMKEDVLAHVFDNVWS
KAVGCMEQLTRSHWEGCASDDESNVEITRLDSGSPYVLNEQHPLVLPRVPQSKVPSITSSPMSFCQASGH
QPNVSGLLIHGMPLQPRNLSLMDKLLDLDDKLLTRPGSSSVLSNRNWPNRAMELSTSSLSYTTQSARRRN
PPPRTLHPISTSHSRAGTPWPVEEILRGPRVPVTADTLSSPSPMTLGRNNLLPPIGTVEVEHLSAMGPQR
PTKSHGDSSRARSAVVDEPNQQPQERLLLPVFSRPNTTQSFLPDTQYRSSCASEYPHQARPGRGSAGPQS
HGSTKPQSRGGPISRTRQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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