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Report for CCDS40108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40108.1 Public Mus musculus 7 Abca14 23 108 98 CCDS HistoryNCBI Gene:67928Re-query CCDS DB by CCDS ID:40108.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084640.2 ENSMUSP00000081690.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084640.2Link to Ensembl Protein Viewer:ENSMUSP00000081690.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084640Re-query CCDS DB by Protein ID:ENSMUSP00000081690
Original member Current member NCBI NM_026458.4 NP_080734.3 Accepted alive Link to Nucleotide Sequence:NM_026458.4Link to Protein Sequence:NP_080734.3Re-query CCDS DB by Nucleotide ID:NM_026458Re-query CCDS DB by Protein ID:NP_080734Link to BLAST:NP_080734.3

Chromosomal Locations for CCDS 40108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120207379 120207438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120207793 120208042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120211510 120211637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120212636 120212795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120216129 120216388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120223525 120223641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120223961 120224078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120224345 120224518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120227400 120227581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120232858 120232989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120238405 120238534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120246839 120246993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120247193 120247348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120247937 120248147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120251160 120251310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120252185 120252283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120253297 120253459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120255261 120255558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120278075 120278327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120278461 120278665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120283019 120283241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120289458 120289619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120294116 120294294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120312161 120312286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120312509 120312703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120317901 120318088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120318752 120318922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120319301 120319491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120324559 120324632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120325038 120325178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5052 nt):
ATGGATTCACTACAGATGAAGCAGTTTTCAGTCCTCCTGTGGAAAAACTTCCTTCTAAAGAGCCGGAATG
TGGTTGGCTTAGTGGTGGAGATCATCTTGATATTTCTGTTGTTTGTATGGACTTTGACTGTACGCAGAAT
TTCAAAGAAGACATCTATAAGTGATGTGATTTTCAATCCTATTCTCTTGACATTGCCTAAATTCCTTAAT
GAAAACTTTGACTATGAATTGGCTTATGTGCCTTCTGAGAGTAATGCAGCAAGAAATATTACTGAGATGG
TGAAAAAGGATTTAAATTTCAACTTTAAAGTTCAAGGCTTTCCTTCGGAAGAATCTTTTGAGAGATACAT
TAAGTATGAGAACAAGGATGCGCATGTGCTGGCTGCTATTGTGTTTGATCACAAGTTCAAAACCAGCAAT
GAACGCTTGCCACTTCAGGTAAAATATAGTTTGCGCTTCGGTCGTATCTATGATCCTGAAAATTTGTTTC
AGCCGTCTAAGTATCAGAAAGAAATAGAGTGGAATACATCAACTCTCTTCCCATCCGTGCCTTCTCTAGG
ACCCCGGAACTTCTTGGAAAACGATGGGGGAAACCCTGGATACATCAGAGAAGGATTTCTTATCGTGCAG
CATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCA
CAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTAT
GTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAA
AAGGAAAAGAGATTAAAGGAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTACT
TCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTCCTCAAGATTAC
ACACGAGAGAGTCTTCCAGCATAGTGACCCGCTCTTCATCGCCTTCTATTTCATGTGTTTTGCCGTCTCC
TCAGTGCTGCTCGGCTTCCTGATTAGCACACTCTTTAATAAAGCCTCTCTGGCCACTTCCATTGCAGGGT
TCCTCCACTTCCTCACCTTCTTTCCATATTTGATACTATATCATAAGTATGACCAGATAAGCCTCAGTGG
GAAGCTGGCTCTCTGTCTCATTACCAACACGGCGCTAGCATTTGGGACTGACTTGATATGTAAGCTGGAA
ATGAAGGGGCACGGCGCTCAGTGGAACAACTTTGCTACAAAAGTAAACGCCGATGATGACTTAACCTTGG
CCCACATAATAGGAATGTTTTTATTTAGTGCTTTTCTGTATGGCCTTGTGGCCTGGTACTTAGACGCTGT
CTTTCCAGGGACGTATGGTGTGCCCAAGCCCTGGAACTTTTTCCTGCAGAAAGCCTACTGGTTTGGAGAG
CCAGCCTTAAGCAGGGAAGAGAGCCAAGTCTCTGATTTACTTTCCAGTGATTTTATGGAGCCTGAACCTG
TTGGCTTAGTGGCTGGCATCCGGATTCAGCATTTGTACAAGGAATTCATTTTAAAAAACAGTACTCTGAT
GGCAGTAAATGACTTGTCTTTGAACTTGTATGAGGGGCAGATAACTGTTCTTCTCGGACATAACGGGGCA
GGAAAAACCACCACCTTGTCCATCCTCACAGGTTTGTATCTTCCTACCAGAGGAAAGGTCTATATTAGTG
GATATGACATCTCATCTGACATGGTTCAAATTAGAAAAAGCTTGGGCTTGTGTCCCCAGGATGACCTGTT
GTTCCCGATGCTGACAGTGTCAGAACACCTTCATTTCTACTGCGTGATCAAAGGAATACCTTTGCAGAAC
CAATCAAGAGAAACTAACAGAATGCTCACTTCTTTTGGCCTGCTTCAGCAAAGTAATACCATGTCAAAGG
ATCTGAGCGGAGGAATGAAGCGCAAGCTCTCAATCATTATAGCTCTGATAGGGGACACTAAGGTGGTGAT
CCTTGATGAGCCAACATCTGGCATGGATCCAGTCTCCAGGAGGGCCACCTGGGACCTACTTCAGCATTAT
AAAAAGGACCGTACCATCTTACTGACCACACACCATATGGATGAGGCCGATGTGCTTGGTGACCGGATCG
CCATCCTGGTCATGGGGATCCTGAAGTGCTGTGGCTCTTCGCTTTTCCTGAAGAAACTATATGGTGTGGG
GTATCACCTAGTCATCGTGAAGACTCCTGACAGCAATGATGAAAAAATCTTCCAGCTGATTAAGAATTAC
ATACCGACTGCCAAGATGGAGACCAATGTTGCAGCTGAGCTGTCCTTTATCTTGCCCAAGGAGCACACAC
ACAGGTTTGCAGAGCTTTTCACAGACCTAGAAGAAAAACAAGAAGAGCTAGGAATCTCTGGCTTTGGTGT
CTCCATGACTACCATGGATGAGGTTTTCTTCAAGGTCAGTAATCTGGAAGATTTGAAATTGAACACTGAG
ATTGCTCCATCAGCTTCCATAGTGAGCCAAAGCTCAAATGAAGACAACCAGAACATGAATGTGCCCAGAA
ATTTTGAGCGACCAGGTTACTCAAGAAGACACTTGGATTCTTCATTCAATGCCGGGTGGTCTCTTTACAT
CCAGCAGTTCAGAGCCATGTTCATCAAAAGGGTAATGTTCTCTTGGCGCTACTGGAAACTGCTGCTGTTG
CAGTTGCTGGCACTTCTGGGTCTCATGTATCTTCTGATAAAAGGAATAAGTTTCTCAGTTCCTAAAGAGC
CTGCCAGGGTGATGGACTTGGAACAGTATGGCGAGACCATTGTTCCTTTCTCAGTTTCTGGGGACCCCAA
TTTGACCCAAATTCTCACCAAAAATCTTGAGACCATGTTGAAGGCTAAAAAGCAAAAAATTCATGAAGTA
CAAGGTGATATGAAGAACTACTTGCTGACAAGTAAAGACTGCATTTACTCGTGCATCGTTGCCTTTTCCC
TTGATGTTACCACAGAAGAAAAGACATTTATCTTTTGGTTTAACAATGAGGCATACCATGCAGCACCGTT
ATCTCTGTCGATATTAGACAACATTATTTATAAGTATCTCTCTGGCCCTGATGCCACCATTACAGTCTCC
AACAACCCTCAGCCTCAACGTGTCACCAAAGACAAATCTAATGAAAGAAGCATATCAGGAATCCAGATAG
TTTTTAACTTGCTCTTTGGGATGAGTATCTTCACCAGTGGCTTTTGCCTCATGACAGTGACTGAGAGAGT
TAGCAAAGCAAAGCACATACAGTTTGTGAGTGGTGTCTATACCTTGAATTTTTGGCTCTCCGCTTTGCTG
TGGGACCTCATCATCCACTTCGTGGCCTGTGTCTTGCTGCTGGTAGTGTTCCTATACACTGATGTGGATA
TATTGTTGGAGAAATACCACTTCCTGGACACAATGTTCATCCTCATGTTGTTTGGCTGGTCTATTATCCC
CTTCATCTACCTACTAAGCTTCTGGTACAACAACAGCACCAATGCCTACATCAAGATCTTTGTCTTCAAC
CACTGTTTAGGGTTTATCAGTATAATTGTGGATGCTGTGGTACAAATCATACCAGATATTAAAACCAGTA
CTAAGAATCTCATACTTAACTCCATGCTGCTGTTACCCATTTATAACTTTGGGATGAGTATCTACAAATA
CTATAACATCCACGAGATAAGGAAATTATGTTCTTCTTTGGGATATATTAATACCATTCCAAGTTGCAAA
AGTCAAATTATTGACATTCCTATATACAGTATGAATCAAAAAGCAATCGGAAGGCATGTGACTGCCATGG
CTGCCACAGGACTGATATACTTTATCCTCATTATCCTTCTGGAGACTACTTCATGGAATTTAAAGATCTT
CATATATCGATATGTTCTCTTTGGCATCTACAGGATATTTTATAAGGCTAGAATGTCTGAGGAGTTATCT
GGATACTCAGAAGAGGAAGATGTACAAAATGAAAGAGAGACTATCCTGAACCATCCTTGGCGCTCACTAA
ATTCTACTGTGCTCATTAAAGAGCTCATAAAGATATATTTTAAAATTCCACCTACTCTGGCTGTGAGAAA
TATCTCTGTCGCCATTCAAAAGGAGGAGTGCTTTGGACTGCTGGGATTAAATGGAGCTGGGAAAACCACT
ACCTTTAAAATTCTGACTGGAGAAGAGATAGCTACCTCTGGGGATGTGTTCATTGAAGGCTACAGCATCA
CCAGAAATATTTTAAAGGTAAGGTCAAAAGTTGGCTACTGTCCGCAGTTTGATGCCTTGCTGGATTACAT
GACCTCTCGGGAGATATTGACAATGTATGCCAGGGTGTGGGGGATTCCAGAGAACAGTATTAGAGCCTAT
GTGGACAACTTGTTGAAAATGCTGTATCTGAAACCACAGGCTGATAAGTTTATTTACACTTTGAGTGGAG
GAAACAAACGTAGGCTGAGCACTGCCATTGCCATAATGGGAAACTCTACAGTTGTCTTCCTAGATGAGCC
ATCCACTGGCATGGACCCACTAGCCCGGCGCATGCTCTGGAACGCAGTGATAAAGACAAGGGAGAGTGGC
AAGGTCATCATCATAACCTCTCACAGTATGGAGGAGTGTGAAGCTCTCTGTACCAGGCTAGCCATCATGG
TGCAGGGGAAGTTTGTGTGCCTGGGAAGCCCTCAGCATCTCAAGAACAAATTTGGCAATATTTACACCAT
GACCATCAAGTTCAAAACTGACACCGATGACAACACGGTACAAGATTTAAAAGATTTTATTGCCGAAGTT
TTCCCAGGTAGCGACTTAAAGCAAGAGAATCAAGGGATCCTTAATTACTACATTCCCAGCAAGAACAACA
GCTGGGGAAAGGTGTTTGGCATTCTGGAGAAAGCGAAGGAGGACTACAATTTGGAAGATTATTCCATCAG
TCAGATCACGCTGGAGCAAGTCTTCCTGACCTTTGCCAATCCAGATAACCCACGGAGCGGCTATGAGAAA
GCAGTGCCCTGA

Translation (1683 aa):
MDSLQMKQFSVLLWKNFLLKSRNVVGLVVEIILIFLLFVWTLTVRRISKKTSISDVIFNPILLTLPKFLN
ENFDYELAYVPSESNAARNITEMVKKDLNFNFKVQGFPSEESFERYIKYENKDAHVLAAIVFDHKFKTSN
ERLPLQVKYSLRFGRIYDPENLFQPSKYQKEIEWNTSTLFPSVPSLGPRNFLENDGGNPGYIREGFLIVQ
HSVDKAIMMYHSGRAAEDIFANTTIYAERFPHPAFIHDSFLWTFIAMFPWTILFTFTQMALVIVGTIMLE
KEKRLKEYQLMVGLSNAMLWVSYFITFLLMYFIIICLLCGILFLKITHERVFQHSDPLFIAFYFMCFAVS
SVLLGFLISTLFNKASLATSIAGFLHFLTFFPYLILYHKYDQISLSGKLALCLITNTALAFGTDLICKLE
MKGHGAQWNNFATKVNADDDLTLAHIIGMFLFSAFLYGLVAWYLDAVFPGTYGVPKPWNFFLQKAYWFGE
PALSREESQVSDLLSSDFMEPEPVGLVAGIRIQHLYKEFILKNSTLMAVNDLSLNLYEGQITVLLGHNGA
GKTTTLSILTGLYLPTRGKVYISGYDISSDMVQIRKSLGLCPQDDLLFPMLTVSEHLHFYCVIKGIPLQN
QSRETNRMLTSFGLLQQSNTMSKDLSGGMKRKLSIIIALIGDTKVVILDEPTSGMDPVSRRATWDLLQHY
KKDRTILLTTHHMDEADVLGDRIAILVMGILKCCGSSLFLKKLYGVGYHLVIVKTPDSNDEKIFQLIKNY
IPTAKMETNVAAELSFILPKEHTHRFAELFTDLEEKQEELGISGFGVSMTTMDEVFFKVSNLEDLKLNTE
IAPSASIVSQSSNEDNQNMNVPRNFERPGYSRRHLDSSFNAGWSLYIQQFRAMFIKRVMFSWRYWKLLLL
QLLALLGLMYLLIKGISFSVPKEPARVMDLEQYGETIVPFSVSGDPNLTQILTKNLETMLKAKKQKIHEV
QGDMKNYLLTSKDCIYSCIVAFSLDVTTEEKTFIFWFNNEAYHAAPLSLSILDNIIYKYLSGPDATITVS
NNPQPQRVTKDKSNERSISGIQIVFNLLFGMSIFTSGFCLMTVTERVSKAKHIQFVSGVYTLNFWLSALL
WDLIIHFVACVLLLVVFLYTDVDILLEKYHFLDTMFILMLFGWSIIPFIYLLSFWYNNSTNAYIKIFVFN
HCLGFISIIVDAVVQIIPDIKTSTKNLILNSMLLLPIYNFGMSIYKYYNIHEIRKLCSSLGYINTIPSCK
SQIIDIPIYSMNQKAIGRHVTAMAATGLIYFILIILLETTSWNLKIFIYRYVLFGIYRIFYKARMSEELS
GYSEEEDVQNERETILNHPWRSLNSTVLIKELIKIYFKIPPTLAVRNISVAIQKEECFGLLGLNGAGKTT
TFKILTGEEIATSGDVFIEGYSITRNILKVRSKVGYCPQFDALLDYMTSREILTMYARVWGIPENSIRAY
VDNLLKMLYLKPQADKFIYTLSGGNKRRLSTAIAIMGNSTVVFLDEPSTGMDPLARRMLWNAVIKTRESG
KVIIITSHSMEECEALCTRLAIMVQGKFVCLGSPQHLKNKFGNIYTMTIKFKTDTDDNTVQDLKDFIAEV
FPGSDLKQENQGILNYYIPSKNNSWGKVFGILEKAKEDYNLEDYSISQITLEQVFLTFANPDNPRSGYEK
AVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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