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Report for CCDS28192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28192.1 Public Mus musculus 16 Ccdc80 23 108 98 CCDS HistoryNCBI Gene:67896Re-query CCDS DB by CCDS ID:28192.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061050.5 ENSMUSP00000058752.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061050.5Link to Ensembl Protein Viewer:ENSMUSP00000058752.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061050Re-query CCDS DB by Protein ID:ENSMUSP00000058752
Original member Current member EBI ENSMUST00000099498.9 ENSMUSP00000097097.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099498.9Link to Ensembl Protein Viewer:ENSMUSP00000097097.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099498Re-query CCDS DB by Protein ID:ENSMUSP00000097097
Original member Current member NCBI NM_026439.3 NP_080715.2 Accepted alive Link to Nucleotide Sequence:NM_026439.3Link to Protein Sequence:NP_080715.2Re-query CCDS DB by Nucleotide ID:NM_026439Re-query CCDS DB by Protein ID:NP_080715Link to BLAST:NP_080715.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080715.2 949 Q8R2G6 949 100% 0 0

Chromosomal Locations for CCDS 28192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45094883 45096757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45104380 45104536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45116246 45116382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45118101 45118249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45122847 45122950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45126122 45126202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45127164 45127510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGATGTGGAAAATGGGACCCCACTTCACCACGCTCTTGGCCATGTGGCTGGTGTGTGGCTCAGCATCTC
AT
TCTCCTGCCTTGGATAGCGACAGCCACACTGGACGGAAAGTACCTTTGGTTTCTCCAATCAGCAGTAG
G
TCAGCTCGGTATCTGAGGCACACCGGGAGGTCTGGTGGAGTTGAGAAATCCACCCAGGAAGAACCAAAT
CCT
CAGCCTTTCCAAAGGAGGAAGAGTGTACCAGTGTTGAGATTAGCTCACCCGACCATGAGACCACCCC
CC
TCAGGTATCAATGGAGTTCCAGTCAGACCTGAGGTGAGACCCATAGCTAGGAGCTCGGCGCGTGAGAT
G
GTCCGAGATGAGGGGTCTTCTGCTCGGACAAGAATGTTGCGATTCCCCTCTGGATCTAGCTCTCCCAAT
ATC
CTGGCCAGCTTTGCAGGAAAGAACAGGGTATGGGTCATCTCAGCCCCTCACGCCTCAGAGGGCTACT
AC
CGCCTCATGATGAGCCTCCTGAAGGACGACGTGTATTGTGAGCTGGCAGAAAGGCACATCCAACAGAT
T
GTGCTCTTCCACCAGGCAGGCGAGGAAGGGGGCAAGGTACGGAGGATCACCAATGAAGGGCAGATCCTG
GAG
CAGCCTCTGGACCCCAATCTCATCCCAAAGCTGATGAGCTTCTTGAAACTGGAGAAGGGCAAGTTTA
GC
ATGGTGCTGTTAAAAAAGACTCTGCAGGTGGAGGAGCGCTACCCTTACCCGGTCAGGCTGGAAGCCAT
G
TATGAGGTCATTGATCAAGGTCCCATCCGCAGGATCGAGAAAATCAGGCAGAAGGGTTTTGTCCAAAAG
TGT
AAGGCCTCGGGCATAGAGGGCCATGTAGTCCAGGAAGGAAACGAGGGCGGTGGAGGAGCAGGAGGTA
CA
GGCCTGGGCGGTGATAAGAGGAAAGAGGACCCAAGGAGAACACAAGTCCACCCCACCAGAGAGGCTCC
G
AGAAAGCAGGCCACCAGCAAGGCAGCCACTCCTCAGCCTCCCCCAACTCCAAGGGCCACCACCCTTCCT
CCT
GCTCCAGTCACGACAGCCACTCGGGCCACATCCCGGGTAGTGACAATAGCCGCAAGACCTACAACCA
CC
ACTGCCTATCCAGCTACCCAGAGGCCCTGGACATCCCGGTTGCATCCCTTCTCAGTCTCCCACAGGCC
C
CCTGCAACAGCAGAGGTGACCACTGCCAGGGGCCCCTCCGTCTCAGAGCAGCTATACCCTCTACCTCGG
AAG
GAGCAACAGAGAGAGAAGCCACAGGCCACCAGGAGGCCCAGCAAAGCCACCAACTATGGAAGCTTCA
CA
GCCACCCCACCTCCCACCCTCTGGGAGGTCAGCGCAAGAGTTGTGGGCACAAGCCGTTTCCGGGACAA
C
CGGACAGACAAACGGGAACATGGCCATCAGGACCCAAATGCGGTGCCAGGTCCTCACAAGCCAGTAAAG
GGG
AAGCTGCCCAAAAAGAAGGACAGAATTCTCAGCAACGAATATGAAGACAAGTATGACCTCAGCCAGC
CC
ACCTCCTCTCAGGGGGAGGAGGAGCGGCAGGTGGATAGCGTTCCCTCGCAGAATGCCAAGGAGTCGAA
A
AAGCTTGAAAAGCTCGAGAAACCTGAGAAGGAGAAGAAGAAAAAAGGGAAGAGTGCAAAACAAGACAAG
TTA
CTCAAGAGTGAAAAGCAAGCGAAGAAAGCTGAGAAAAAGACCAAACAGGAGAAAGACAAGAATAAGA
AG
AAAAAGGCGGGTAAGACAGAGCAGGATGACAATCAGAAGCCCACCGCAAAACATCTCGCTCCAAGTCC
C
AAGAAGTCAGTGGCCGACCTGTTGGGGTCTTTCGAAGGCAAACGAAGACTCCTCCTGATCACCACTCCC
AAG
GCTGAGAACAATATGTATGTGCAGCAGCGGGATGAATATCTGGAGAGCTTCTGCAAGATGGCCACCA
GG
AGGATCTCTGTGGTCACCATCTTTGGTCCTGTCAACAACAGCTCCATGAAAATTGATCACTTCCAGCT
A
GATAATGAGAAACCCATGCGTGTGGTGGATGATGATGACTTGGTGGACCAACATCTCATCAGCGAGCTG
AGG
AAGGAGTATGGAATGACCTACGATGACTTCTTCATGGTGCTGACAGACGTGGATCTGAGAGTCAAGC
AA
TACTACGAAGTGCCAATAGCAATGAAGTCCGTGTTTGATCTTATTGACACTTTCCAATCCCGAATCAA
A
GATATGGAGAAGCAGAAGAAGGAGGGCATTGCCTGCAAGGAGGACAAGAGGCAGTCCCTGGAGAACTTC
CTA
TCCAGGTTCCGATGGAGGAGGAGGTTGCTGGTGATCTCTGCTCCTAATGATGAAGACTGGGCCTATT
CA
CAACAGCTCTCTGCCCTCAACGGTCAGGCATGCAATTTTGGTCTGCGACATATAACCATTCTGAAGCT
T
TTGGGTGTTGGAGAGGAAGTTGGAGGAGTTTTAGAACTGTTCCCAATTAATGGGAGCTCCATCGTTGAG
CGG
GAAGATGTGCCAGCCCACTTGGTCAAAGATATCCGCAACTATTTTCAAGTGAGCCCAGAGTACTTCT
CC
ATGCTTCTAGTTGGAAAAGATGGCAATGTTAAATCTTGGTATCCTTCTCCTATGTGGTCGATGGTCAT
C
GTGTATGACTTAATTGATTCCATGCAACTTCGGAGACAGGAAATGGCCATTCAGCAGTCTCTGGGGATG
CGC
TGCCCAGAAGATGAGTATGCAGGATATGGTTACCATAGTTATCACCAAGGATACCAGGATGGCTACC
AG
GATGACTACCGTCATCATGAAAGTTACCACCATGGATACCCTTACTGA


Translation (949 aa):
MMWKMGPHFTTLLAMWLVCGSASHSPALDSDSHTGRKVPLVSPISSRSARYLRHTGRSGGVEKSTQEEPN
P
QPFQRRKSVPVLRLAHPTMRPPPSGINGVPVRPEVRPIARSSAREMVRDEGSSARTRMLRFPSGSSSPN
I
LASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQAGEEGGKVRRITNEGQIL
E
QPLDPNLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQK
C
KASGIEGHVVQEGNEGGGGAGGTGLGGDKRKEDPRRTQVHPTREAPRKQATSKAATPQPPPTPRATTLP
P
APVTTATRATSRVVTIAARPTTTTAYPATQRPWTSRLHPFSVSHRPPATAEVTTARGPSVSEQLYPLPR
K
EQQREKPQATRRPSKATNYGSFTATPPPTLWEVSARVVGTSRFRDNRTDKREHGHQDPNAVPGPHKPVK
G
KLPKKKDRILSNEYEDKYDLSQPTSSQGEEERQVDSVPSQNAKESKKLEKLEKPEKEKKKKGKSAKQDK
L
LKSEKQAKKAEKKTKQEKDKNKKKKAGKTEQDDNQKPTAKHLAPSPKKSVADLLGSFEGKRRLL
LITTP
K
AENNMYVQQRDEYLESFCKMATRRISVVTIFGPVNNSSMKIDHFQL
DNEKPMRVVDDDDLVDQHLISEL
R
KEYGMTYDDFFMVLTDVDLRVK
QYYEVPIAMKSVFDLIDTFQSRIKDMEKQKKEGIACKEDKRQSLENF
L
S
RFRWRRRLLVISAPNDEDWAYSQQLSALNGQACNFGLRHITILKLLGVGEEVGGVLELFPINGSSIVE
R
EDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDSMQLRRQEMAIQQSLGM
R
CPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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