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Report for CCDS13567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13567.1 Public Homo sapiens 21 HSPA13 24 110 108 CCDS HistoryNCBI Gene:6782Re-query CCDS DB by CCDS ID:13567.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285667.4 ENSP00000285667.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285667.4Link to Ensembl Protein Viewer:ENSP00000285667.3Re-query CCDS DB by Nucleotide ID:ENST00000285667Re-query CCDS DB by Protein ID:ENSP00000285667
Original member Current member NCBI NM_006948.5 NP_008879.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006948.5Link to Protein Sequence:NP_008879.3Re-query CCDS DB by Nucleotide ID:NM_006948Re-query CCDS DB by Protein ID:NP_008879Link to BLAST:NP_008879.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008879.3 471 P48723 471 100% 0 0

Chromosomal Locations for CCDS 13567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14373617 14374284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14375652 14375819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14378199 14378412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14381203 14381543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14383095 14383119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGCCAGAGAGATGACGATCTTAGGATCGGCTGTTTTGACTCTCCTGTTGGCCGGCTATTTGGCACAAC
AGTATTTACCATTGCCTACTCCTAAAGTGATTGGTATTGATCTTGGCACCACCTATTGTTCTGTTGGGGT
GTTTTTTCCTGGCACAGGAAAAGTAAAGGTGATTCCAGATGAAAATGGGCATATCAGCATACCCAGCATG
GTGTCTTTTACTGACAATGATGTATATGTGGGATATGAAAGCGTAGAGCTGGCAGATTCAAATCCTCAAA
ACACAATATATGATGCCAAAAGATTCATAGGCAAGATTTTTACCGCAGAAGAGTTGGAGGCTGAAATTGG
CAGATACCCATTTAAGGTTTTAAACAAAAATGGAATGGTTGAGTTTTCTGTGACAAGTAATGAGACCATC
ACAGTGTCCCCAGAATATGTTGGCTCTCGACTATTGTTGAAGTTAAAGGAAATGGCAGAGGCATATCTTG
GAATGCCAGTTGCCAATGCTGTCATTTCTGTACCAGCAGAATTTGATCTAAAACAGAGAAATTCAACAAT
TGAAGCTGCTAACCTTGCAGGACTGAAGATTTTGAGGGTAATAAATGAACCCACAGCAGCAGCTATGGCC
TATGGTCTCCACAAGGCTGACGTCTTCCACGTCTTGGTGATAGACTTGGGCGGAGGAACTCTAGATGTGT
CTTTACTGAATAAACAAGGAGGGATGTTTCTAACCCGAGCAATGTCTGGAAACAATAAACTTGGAGGACA
GGACTTCAATCAGAGATTGCTTCAGTACTTATATAAACAGATCTATCAAACATATGGCTTCGTGCCCTCT
AGGAAAGAGGAAATCCACAGATTGAGACAAGCTGTGGAAATGGTCAAATTAAATCTGACTCTTCATCAAT
CTGCTCAGTTGTCAGTATTACTAACGGTGGAGGAGCAGGACAGGAAGGAACCTCACAGTAGTGACACTGA
ACTGCCAAAAGACAAACTTTCCTCAGCAGATGACCATCGCGTGAACAGTGGGTTTGGACGTGGCCTTTCT
GATAAGAAAAGTGGAGAAAGTCAGGTTTTATTTGAAACAGAAATATCACGGAAACTCTTTGATACCCTTA
ATGAAGACCTCTTTCAGAAAATACTGGTACCCATTCAGCAAGTATTGAAAGAAGGCCACCTGGAAAAGAC
TGAGATTGATGAGGTGGTTTTAGTTGGGGGCTCCACTCGTATTCCTCGGATCCGTCAAGTCATTCAAGAG
TTCTTTGGAAAAGATCCCAACACATCTGTAGACCCTGACCTAGCAGTAGTAACGGGAGTGGCTATCCAAG
CAGGGATTGATGGAGGCTCTTGGCCTCTCCAAGTCAGTGCTTTAGAAATTCCCAATAAGCATTTACAAAA
AACCAACTTCAACTGA

Translation (471 aa):
MAREMTILGSAVLTLLLAGYLAQQYLPLPTPKVIGIDLGTTYCSVGVFFPGTGKVKVIPDENGHISIPSM
VSFTDNDVYVGYESVELADSNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFKVLNKNGMVEFSVTSNETI
TVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPAEFDLKQRNSTIEAANLAGLKILRVINEPTAAAMA
YGLHKADVFHVLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQIYQTYGFVPS
RKEEIHRLRQAVEMVKLNLTLHQSAQLSVLLTVEEQDRKEPHSSDTELPKDKLSSADDHRVNSGFGRGLS
DKKSGESQVLFETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGGSTRIPRIRQVIQE
FFGKDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNKHLQKTNFN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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