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Report for CCDS30242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30242.1 Public Mus musculus X Rab39b 23 108 98 CCDS HistoryNCBI Gene:67790Re-query CCDS DB by CCDS ID:30242.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033545.5 ENSMUSP00000033545.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033545.5Link to Ensembl Protein Viewer:ENSMUSP00000033545.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033545Re-query CCDS DB by Protein ID:ENSMUSP00000033545
Original member Current member NCBI NM_175122.6 NP_780331.1 Accepted alive Link to Nucleotide Sequence:NM_175122.6Link to Protein Sequence:NP_780331.1Re-query CCDS DB by Nucleotide ID:NM_175122Re-query CCDS DB by Protein ID:NP_780331Link to BLAST:NP_780331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780331.1 213 Q8BHC1 213 100% 0 0

Chromosomal Locations for CCDS 30242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75574581 75575007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75577793 75578007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGAGGCCATCTGGCTGTACCAGTTCCGGCTCATTGTCATCGGCGATTCCACGGTGGGCAAGTCCTGCC
TGATCCGCCGCTTCACCGAGGGCCGCTTTGCTCAGGTTTCAGATCCCACCGTGGGGGTAGATTTTTTCTC
CCGTTTGGTGGAGATCGAGCCAGGAAAACGCATCAAGCTCCAGATCTGGGATACAGCGGGTCAAGAGAGG
TTCAGATCCATCACTCGCGCCTACTACAGGAATTCAGTAGGTGGTCTTCTCTTATTTGACATTACCAACC
GCAGGTCCTTCCAGAATGTCCATGAGTGGTTAGAAGAGACCAAAGTACACGTTCAGCCCTACCAAATTGT
ATTTGTTCTGGTGGGTCACAAGTGTGACCTGGATACACAGAGGCAAGTGACTCGCCACGAGGCCGAGAAA
CTGGCTGCTGCATACGGCATGAAGTACATTGAGACGTCAGCCCGAGATGCCATTAATGTGGAGAAAGCCT
TCACAGACCTGACAAGAGACATATATGAGCTGGTTAAAAGGGGGGAGATTACAATCCAGGAGGGTTGGGA
AGGGGTGAAGAGTGGATTTGTACCAAATGTTGTTCATTCTTCAGAAGAGGTTATCAAATCAGAGAGGAGA
TGTTTGTGCTAG

Translation (213 aa):
MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQER
FRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEK
LAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFVPNVVHSSEEVIKSERR
CLC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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