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Report for CCDS17295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17295.1 Public Mus musculus 3 Zfp639 23 108 98 CCDS HistoryNCBI Gene:67778Re-query CCDS DB by CCDS ID:17295.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029203.12 ENSMUSP00000029203.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029203.12Link to Ensembl Protein Viewer:ENSMUSP00000029203.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029203Re-query CCDS DB by Protein ID:ENSMUSP00000029203
Original member Current member EBI ENSMUST00000193287.5 ENSMUSP00000141341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193287.5Link to Ensembl Protein Viewer:ENSMUSP00000141341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193287Re-query CCDS DB by Protein ID:ENSMUSP00000141341
Original member Current member EBI ENSMUST00000191783.5 ENSMUSP00000141446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191783.5Link to Ensembl Protein Viewer:ENSMUSP00000141446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191783Re-query CCDS DB by Protein ID:ENSMUSP00000141446
Original member Current member NCBI NM_001161818.1 NP_001155290.1 Accepted alive Link to Nucleotide Sequence:NM_001161818.1Link to Protein Sequence:NP_001155290.1Re-query CCDS DB by Nucleotide ID:NM_001161818Re-query CCDS DB by Protein ID:NP_001155290Link to BLAST:NP_001155290.1
Original member NCBI NM_001356625.1 NP_001343554.1 Updated not alive Link to Nucleotide Sequence:NM_001356625.1Link to Protein Sequence:NP_001343554.1Re-query CCDS DB by Nucleotide ID:NM_001356625Re-query CCDS DB by Protein ID:NP_001343554
Current member NCBI NM_001356625.2 NP_001343554.1 Accepted alive Link to Nucleotide Sequence:NM_001356625.2Link to Protein Sequence:NP_001343554.1Re-query CCDS DB by Nucleotide ID:NM_001356625Re-query CCDS DB by Protein ID:NP_001343554Link to BLAST:NP_001343554.1
Original member NCBI NM_144519.4 NP_653102.1 Updated not alive Link to Nucleotide Sequence:NM_144519.4Link to Protein Sequence:NP_653102.1Re-query CCDS DB by Nucleotide ID:NM_144519Re-query CCDS DB by Protein ID:NP_653102
Current member NCBI NM_144519.5 NP_653102.1 Accepted alive Link to Nucleotide Sequence:NM_144519.5Link to Protein Sequence:NP_653102.1Re-query CCDS DB by Nucleotide ID:NM_144519Re-query CCDS DB by Protein ID:NP_653102Link to BLAST:NP_653102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155290.1 485 Q99KZ6 485 100% 0 0
NP_001343554.1 485 Q99KZ6 485 100% 0 0
NP_653102.1 485 Q99KZ6 485 100% 0 0

Chromosomal Locations for CCDS 17295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32515295 32515352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32517029 32517139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32519110 32519244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32519532 32520685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAATGAATATCCTAAAAAAAGAAAAAGGAAGACTTTACACCCTTCTCGCTATTCAGATTCTTCTGGAA
TAAGCAGAATTGCAGATGGAGTCAGTGGGATTTTTTCTGATCACTGTTACAGTGTCTGCTCTATGAGACA
GCCAGACTTAAAATATTTTGACAACAAAGATGATGATTCTGATCCTGAGACAGCAAATGACTTGCCCAAA
TTTGCAGATGGAACCAAGGCCAGAAACAGGAATCAGAGCTACCTGGTTCCCAGCCCTGTGCTTAGGATTC
TAGACCACACTGTCTTTTCCACAGAAAAATCTACTGAAGTTGAGATCTGTGATGAAGAATGTGCCTCACC
TGAGTCAGTGCATCAGCATACTCAAGAGGAGAGCCCTATAGAAGTTCATACCTCAGAAGACGTCCCAATT
GCTGTAGAAGTTCATGCAATCTCTGAAGACTATGATATAGAGGCAGAGAACAATTCCTCTGAGAGCCTCC
AAGACCAGGCCGATGAAGAACCACCAGCTAAACTCTGTAAAATTCTTGACAAGGGCCAGGCTTTGAATGT
GACTGCCCAACAGAAGTGGCCTCTCCTGAGAGCCAACAGCAGTGGTCTCTACAAGTGTGAACTTTGTGAA
TTTAACAGTAAATACTTTTCTGACCTAAAGCAACATGTGATCCTGAAACACAAGCGCACTGACTCGAATG
TGTGTCGGGTGTGTAAGGAAAGCTTCTCTACCAACATGCTTCTCATTGAACACGCCAAACTCCATGAAGA
AGACCCCTACATCTGTAAGTACTGTGATTACAAGACTGTGATCTTTGAGAACCTCAGCCAGCACATTGCA
GACACGCACTTCAGCGACCACCTTTACTGGTGTGAGCAGTGTGACGTGCAGTTCTCCTCAAGCAGTGAGC
TCTACCTGCACTTCCAGGAGCATAGCCGTGATGAGCAGTACCTGTGCCAGTTCTGTGAGCACGAGACAGG
GGACCCTGAGGACTTGCACAGCCACGTTGTCAACGAGCACGCTCGCAGACTGATTGAGCTGAGTGACAAG
TGTGGCAGTGGTGGCCATGGGCAGTGCAGCCTTTTAAGCAAGATCACCTTTGACAAATGTAAAAATTTCT
TCGTGTGTCAAGTATGTGGCTTTCGGAGCAGACTTCACACAAATGTCAACAGACACGTGGCTATCGAGCA
TACTAAAATATTCCCTCATGTTTGTGATGACTGTGGGAAGGGCTTTTCCAGCATGTTGGAATATTGCAAG
CATCTAAATTCACATCTATCTGAAGGGATTTACTTATGCCAATATTGTGAATATTCAACAGGACAAATTG
ACGATCTTAAAATTCATCTAGATTTCAAGCATTCAGCTGACTTGCCTCATAAATGTAGTGAGTGCTTGAT
GAGGTTTGGGAACGAAAGGGACTTACTCGGTCACCTTCAAGTCCATGAGACTACCTGA

Translation (485 aa):
MNEYPKKRKRKTLHPSRYSDSSGISRIADGVSGIFSDHCYSVCSMRQPDLKYFDNKDDDSDPETANDLPK
FADGTKARNRNQSYLVPSPVLRILDHTVFSTEKSTEVEICDEECASPESVHQHTQEESPIEVHTSEDVPI
AVEVHAISEDYDIEAENNSSESLQDQADEEPPAKLCKILDKGQALNVTAQQKWPLLRANSSGLYKCELCE
FNSKYFSDLKQHVILKHKRTDSNVCRVCKESFSTNMLLIEHAKLHEEDPYICKYCDYKTVIFENLSQHIA
DTHFSDHLYWCEQCDVQFSSSSELYLHFQEHSRDEQYLCQFCEHETGDPEDLHSHVVNEHARRLIELSDK
CGSGGHGQCSLLSKITFDKCKNFFVCQVCGFRSRLHTNVNRHVAIEHTKIFPHVCDDCGKGFSSMLEYCK
HLNSHLSEGIYLCQYCEYSTGQIDDLKIHLDFKHSADLPHKCSECLMRFGNERDLLGHLQVHETT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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