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Report for CCDS17570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17570.1 Public Mus musculus 3 Lce1h 23 108 98 CCDS HistoryNCBI Gene:67718Re-query CCDS DB by CCDS ID:17570.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051521.4 ENSMUSP00000058647.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051521.4Link to Ensembl Protein Viewer:ENSMUSP00000058647.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051521Re-query CCDS DB by Protein ID:ENSMUSP00000058647
Original member Current member NCBI NM_026335.2 NP_080611.1 Accepted alive Link to Nucleotide Sequence:NM_026335.2Link to Protein Sequence:NP_080611.1Re-query CCDS DB by Nucleotide ID:NM_026335Re-query CCDS DB by Protein ID:NP_080611Link to BLAST:NP_080611.1

Chromosomal Locations for CCDS 17570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92763421 92763843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAAGCCCCTGCCAAGTGCCCTCCCAAGTGCCAGACCCCAA
AGTGCCCTCCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCTTGGG
TTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGTAGCTCT
GGTGGCTGCTGCAGTTCTGGGGGTGGAGGCTGCTGTCTGAGCCACCACAGACCCCACAGATCTCTTCGTC
GCCATCGTCACAGCTCTGGGTGCTGTAGCAGTGGTGGCAACAGTGGCTGCTGTGGCAGCAGTGGTGGCAG
CAGCGGCTGCTGTGGCAGCAGTGGCAGCAGTGGCTGCTGTGGCAGTAGCCAGCAGTCTGGGGGCTGCTGC
TGA

Translation (140 aa):
MSCQQSQQQCQAPAKCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGGCCGSSSGGCCGSSSGGCCSS
GGCCSSGGGGCCLSHHRPHRSLRRHRHSSGCCSSGGNSGCCGSSGGSSGCCGSSGSSGCCGSSQQSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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