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Report for CCDS20351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20351.1 Public Mus musculus 6 Vmn1r49 23 108 98 CCDS HistoryNCBI Gene:24112Re-query CCDS DB by CCDS ID:20351.1Re-query CCDS DB by GeneID:24112See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071865.1 ENSMUSP00000071762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071865.1Link to Ensembl Protein Viewer:ENSMUSP00000071762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071865Re-query CCDS DB by Protein ID:ENSMUSP00000071762
Original member Current member EBI ENSMUST00000203791.2 ENSMUSP00000145107.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203791.2Link to Ensembl Protein Viewer:ENSMUSP00000145107.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203791Re-query CCDS DB by Protein ID:ENSMUSP00000145107
Original member Current member EBI ENSMUST00000226368.1 ENSMUSP00000154456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226368.1Link to Ensembl Protein Viewer:ENSMUSP00000154456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226368Re-query CCDS DB by Protein ID:ENSMUSP00000154456
Original member Current member NCBI NM_011911.1 NP_036041.1 Accepted alive Link to Nucleotide Sequence:NM_011911.1Link to Protein Sequence:NP_036041.1Re-query CCDS DB by Nucleotide ID:NM_011911Re-query CCDS DB by Protein ID:NP_036041Link to BLAST:NP_036041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036041.1 310 Q9WUF1 310 100% 0 0

Chromosomal Locations for CCDS 20351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90072086 90073018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGTAAAGCAAACTTACTCCACACTGACAATAACATGAAAATCATCTTGTTCTCTGAAGTGAGTGTTG
GGATCTCAGCTAACACTATCCTCTTTTTTGCCCGCCTCTGCAAGCTCCTTGGTGAGAACAAGCCTAAACC
CATTGATCTCTACATTGCTTTTCTCTCCCTGACCCAACTAATGCTACTTATAACTATGGGACTCATAGCT
GTGGACATGTTTATGCCTTGGGGGAGATGGAATTCTACCACATGCCAATCCCTTATCTATTTGCACAGGC
TTCTGAGAGGCCTCGCCCTTTCTGCTACCTGTCTGCTGAATGTCCTTTGGACTATCACACTTAGTTCTAG
AAGCTCCTGTTTAACAAAGTTTAAACATAAATCTCCCCATCACATCTCAGGTGCCTTTCTTTTCTTCTAT
GTCCTCTATATGTCTTTTAGCAGTCATGTCTTAGTATCAATTATTGTTACCCCCAACTTGACCTCAGAAG
ATTTTATGTATGTTACTCAGTCCTGCTCACTTCTACCCATGAGTTACTCCAGAGAAAGCAGGTTTTCCAC
TCTTATGGCCATCAGGGAAACCTTTCTTATCAGTCTCATGGCCCTGTCCAGTGGGTACATGGTAGCTCTC
CTATGGAGGCACAAGAAGCAGGCCCAGCATCTTCGCAGCACCAGCCTTTCTTCAAAGGCATCCCCAGAGC
AAAGGGCCACCAGGACCATCATGCTGCTCACGAGCCTCTTTGTGGTTCTCTACATTTTGGAAAGAGTTGT
CTTCCAATCAAGGCTGAAGTTCAAGGATTGCTCAGTATTCTACTTTGTCCATATTATTATGTCCCATAGC
TATGCCACAGTCAGCCCTTTTGTGTTTATTTGTACTGAAAAACATATAATTAAGTTTTGGGAGTCAATTT
TTGGCAGAATAGTAAATATTTGA

Translation (310 aa):
MSKANLLHTDNNMKIILFSEVSVGISANTILFFARLCKLLGENKPKPIDLYIAFLSLTQLMLLITMGLIA
VDMFMPWGRWNSTTCQSLIYLHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFY
VLYMSFSSHVLVSIIVTPNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVAL
LWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIMSHS
YATVSPFVFICTEKHIIKFWESIFGRIVNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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