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Report for CCDS39403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39403.1 Public Mus musculus 5 Ubl3 23 108 98 CCDS HistoryNCBI Gene:24109Re-query CCDS DB by CCDS ID:39403.1Re-query CCDS DB by GeneID:24109See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079324.13 ENSMUSP00000078303.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079324.13Link to Ensembl Protein Viewer:ENSMUSP00000078303.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079324Re-query CCDS DB by Protein ID:ENSMUSP00000078303
Original member Current member EBI ENSMUST00000164904.1 ENSMUSP00000131049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164904.1Link to Ensembl Protein Viewer:ENSMUSP00000131049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164904Re-query CCDS DB by Protein ID:ENSMUSP00000131049
Original member Current member EBI ENSMUST00000201595.3 ENSMUSP00000144073.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201595.3Link to Ensembl Protein Viewer:ENSMUSP00000144073.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201595Re-query CCDS DB by Protein ID:ENSMUSP00000144073
Original member Current member NCBI NM_001359199.1 NP_001346128.1 Accepted alive Link to Nucleotide Sequence:NM_001359199.1Link to Protein Sequence:NP_001346128.1Re-query CCDS DB by Nucleotide ID:NM_001359199Re-query CCDS DB by Protein ID:NP_001346128Link to BLAST:NP_001346128.1
Original member Current member NCBI NM_011908.2 NP_036038.1 Accepted alive Link to Nucleotide Sequence:NM_011908.2Link to Protein Sequence:NP_036038.1Re-query CCDS DB by Nucleotide ID:NM_011908Re-query CCDS DB by Protein ID:NP_036038Link to BLAST:NP_036038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346128.1 117 Q9Z2M6 117 100% 0 0
NP_036038.1 117 Q9Z2M6 117 100% 0 0

Chromosomal Locations for CCDS 39403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148506135 148506187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148506446 148506523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148509269 148509355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148511894 148512002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148551953 148551979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGTCCAGTCATGTCCCGGCGGATATGATTAATTTGCGCCTCATCTTGGTGAGTGGGAAGACGAAAGAGT
TCCTCTTCTCCCCAAACGACTCTGCCTCTGACATCGCAAAGCACGTGTATGACAACTGGCCCATGGACTG
GGAAGAAGAGCAGGTCAGCAGCCCAAACATTCTTCGACTCATTTATCAAGGCAGATTTCTACATGGAAAC
GTCACCCTAGGAGCATTAAAACTTCCTTTTGGCAAAACAACAGTGATGCATTTGGTGGCCAGAGAGACCC
TGCCAGAGCCCAACTCACAAGGTCAGAGAAATCGGGAGAAAACTGGTGAGAGCAACTGCTGTGTGATCCT
GTAG

Translation (117 aa):
MSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN
VTLGALKLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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