NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16590.1 Public Mus musculus 2 Rad51 23 108 98 CCDS HistoryNCBI Gene:19361Re-query CCDS DB by CCDS ID:16590.1Re-query CCDS DB by GeneID:19361See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028795.9 ENSMUSP00000028795.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028795.9Link to Ensembl Protein Viewer:ENSMUSP00000028795.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028795Re-query CCDS DB by Protein ID:ENSMUSP00000028795
Original member Current member NCBI NM_011234.5 NP_035364.1 Accepted alive Link to Nucleotide Sequence:NM_011234.5Link to Protein Sequence:NP_035364.1Re-query CCDS DB by Nucleotide ID:NM_011234Re-query CCDS DB by Protein ID:NP_035364Link to BLAST:NP_035364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035364.1 339 Q08297 339 100% 0 0

Chromosomal Locations for CCDS 16590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119116314 119116400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119118608 119118745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119121426 119121543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119123784 119123875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119127063 119127157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119131504 119131617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119134074 119134203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119134387 119134508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119135049 119135172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCTATGCAAATGCAGCTTGAAGCAAGTGCAGATACTTCAGTGGAAGAAGAAAGTTTTGGTCCACAGC
CTATTTCACGGTTAGAGCAGTGTGGCATAAATGCCAATGATGTGAAGAAATTAGAAGAAGCCGGTTACCA
TACAGTGGAGGCTGTTGCTTATGCACCGAAGAAGGAACTAATAAATATTAAGGGAATTAGTGAAGCCAAA
GCTGACAAAATTCTGACTGAGGCAGCAAAATTGGTTCCAATGGGTTTCACCACGGCAACTGAGTTTCACC
AGCGCCGGTCAGAGATCATACAGATAACTACTGGCTCCAAAGAGCTGGACAAGCTGCTTCAAGGTGGAAT
TGAGACTGGATCTATCACAGAGATGTTTGGAGAATTCCGAACTGGGAAGACACAGATCTGTCATACGTTG
GCTGTTACATGCCAGCTCCCCATTGACCGTGGTGGAGGTGAAGGGAAGGCCATGTACATTGACACCGAGG
GCACCTTTAGGCCGGAGCGGCTGCTAGCAGTAGCTGAGAGATACGGTCTCTCTGGCAGCGATGTCCTAGA
TAATGTAGCATATGCGCGAGGGTTCAACACAGACCACCAGACCCAGCTCCTTTACCAAGCGTCAGCCATG
ATGGTAGAATCCAGGTATGCACTGCTTATTGTAGACAGTGCTACTGCCCTTTACAGAACAGACTACTCAG
GGCGGGGAGAGCTTTCAGCCAGGCAAATGCATTTGGCCAGATTTCTGAGGATGCTGCTTCGACTTGCTGA
TGAGTTTGGTGTCGCAGTGGTAATCACCAACCAGGTAGTAGCCCAAGTAGATGGAGCAGCCATGTTCGCT
GCAGATCCCAAAAAACCCATTGGAGGGAACATCATCGCTCATGCGTCAACCACCAGGCTGTACCTGAGAA
AAGGAAGAGGGGAGACCAGAATCTGCAAAATCTATGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTT
TGCCATTAATGCAGATGGAGTGGGCGATGCCAAAGACTGA

Translation (339 aa):
MAMQMQLEASADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAK
ADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTL
AVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAM
MVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA
ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH