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Report for CCDS16010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16010.1 Public Mus musculus 2 Psmb7 23 108 98 CCDS HistoryNCBI Gene:19177Re-query CCDS DB by CCDS ID:16010.1Re-query CCDS DB by GeneID:19177See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028083.5 ENSMUSP00000028083.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028083.5Link to Ensembl Protein Viewer:ENSMUSP00000028083.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028083Re-query CCDS DB by Protein ID:ENSMUSP00000028083
Original member Current member NCBI NM_011187.1 NP_035317.1 Accepted alive Link to Nucleotide Sequence:NM_011187.1Link to Protein Sequence:NP_035317.1Re-query CCDS DB by Nucleotide ID:NM_011187Re-query CCDS DB by Protein ID:NP_035317Link to BLAST:NP_035317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035317.1 277 P70195 277 100% 0 0

Chromosomal Locations for CCDS 16010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38588177 38588288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38590697 38590848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38613432 38613490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38633851 38633966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38640073 38640213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38642178 38642275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38643358 38643451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38643841 38643902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCGGCTGTGTCGGTGTTTCAGCCACCGGTCGGAGGCTTTTCTTTTGATAATTGTCGCAGGAATGCTG
TCTTGGAAGCGGATTTCGCAAAAAAGGGGTTCAAGCTCCCGAAAGCTCGGAAAACTGGCACTACCATCGC
GGGGGTGGTGTATAAGGATGGCATAGTTCTTGGAGCAGACACGAGAGCAACTGAAGGGATGGTTGTTGCT
GACAAAAACTGTTCAAAAATTCACTTCATATCTCCTAATATTTATTGCTGTGGTGCTGGGACAGCTGCAG
ACACAGACATGACAACCCAGCTTATTTCTTCCAACTTGGAGCTCCACTCTCTGACCACTGGCCGCCTCCC
GAGAGTTGTTACAGCTAATCGGATGCTGAAGCAGATGCTCTTCAGGTATCAAGGTTACATTGGTGCAGCC
CTAGTTTTGGGGGGAGTAGATGTTACTGGACCTCATCTCTACAGCATCTATCCTCATGGATCAACTGATA
AATTGCCTTATGTCACCATGGGTTCTGGCTCCTTGGCAGCAATGGCTGTGTTTGAAGATAAGTTTAGGCC
AGATATGGAGGAGGAAGAAGCCAAGAAGCTAGTGAGTGAGGCTATTGCAGCTGGCATCTTTAATGACTTG
GGGTCTGGAAGCAACATTGATCTGTGTGTTATCAGCAAGAGCAAGCTGGACTTTCTTCGTCCATTCTCAG
TGCCCAACAAGAAAGGGACCAGGCTTGGCCGGTACAGATGTGAGAAAGGCACTACCGCTGTCCTCACCGA
GAAAGTTACCCCTCTGGAGATTGAGGTGCTAGAAGAGACTGTTCAGACAATGGATACTTCGTGA

Translation (277 aa):
MAAVSVFQPPVGGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVA
DKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAA
LVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDL
GSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLEIEVLEETVQTMDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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