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Report for CCDS18670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18670.1 Public Mus musculus 4 Gjb5 23 108 98 CCDS HistoryNCBI Gene:14622Re-query CCDS DB by CCDS ID:18670.1Re-query CCDS DB by GeneID:14622See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046498.2 ENSMUSP00000045325.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046498.2Link to Ensembl Protein Viewer:ENSMUSP00000045325.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046498Re-query CCDS DB by Protein ID:ENSMUSP00000045325
Original member NCBI NM_010291.3 NP_034421.1 Updated not alive Link to Nucleotide Sequence:NM_010291.3Link to Protein Sequence:NP_034421.1Re-query CCDS DB by Nucleotide ID:NM_010291Re-query CCDS DB by Protein ID:NP_034421
Current member NCBI NM_010291.4 NP_034421.1 Accepted alive Link to Nucleotide Sequence:NM_010291.4Link to Protein Sequence:NP_034421.1Re-query CCDS DB by Nucleotide ID:NM_010291Re-query CCDS DB by Protein ID:NP_034421Link to BLAST:NP_034421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034421.1 271 Q02739 271 100% 0 0

Chromosomal Locations for CCDS 18670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127355534 127356349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGAACTGGAGTGTTTTTGAGGGACTCCTGAGCGGAGTCAACAAGTACTCCACAGCCTTTGGTCGCATCT
GGCTGTCTCTGGTCTTCGTCTTCCGTGTGCTGGTGTACCTGGTGACAGCTGAGCGCGTGTGGGGAGACGA
CCAGAAGGATTTTGACTGCAACACCAGGCAACCGGGCTGTACCAATGTCTGCTACGATGAGTTCTTCCCC
GTGTCTCACGTGCGCCTCTGGGCTCTGCAGCTCATCCTGGTCACCTGCCCCTCTTTGCTTGTGGTCATGC
ATGTGGCCTATCGAAAGGCTCGAGAGAAGAAGTACCAGGAAAAGATTGGTGAAGGTTACCTTTACCCGAA
TCCCGGCAAGAAGCGGGGTGGACTCTGGTGGACATACGTCTTCAGCCTCTCGTTCAAGGCCACCATAGAC
ATTATCTTCCTCTACCTCTTCCACGCATTCTATCCCAGATATACCCTCCCTTCTATGGTCAAGTGCCATG
CGGAGCCGTGTCCCAACACAGTGGACTGCTTCATTGCCAAGCCCTCCGAGAAAAACATCTTCATTGTCTT
CATGGTGGTCACGGCCGTCATCTGCATCCTGCTTAACCTTGTGGAGCTGATCTACCTAGTGATTAAGCGG
TGTTCTGAGTGTGCGCAGCTGAGGAGACCACCCACTGCACATGCAAAGAATGACCCAAACTGGGCCAACT
CTCCTAGCAAAGAGAAGGACTTCCTCTCATGCGACCTCATCTTTCTGGGCTCGGACGCTCACCCGCCTCT
GTTACCAGACCGCCCTCGAGCCCACGTGAAGAAAACCATTCTGTGA

Translation (271 aa):
MNWSVFEGLLSGVNKYSTAFGRIWLSLVFVFRVLVYLVTAERVWGDDQKDFDCNTRQPGCTNVCYDEFFP
VSHVRLWALQLILVTCPSLLVVMHVAYRKAREKKYQEKIGEGYLYPNPGKKRGGLWWTYVFSLSFKATID
IIFLYLFHAFYPRYTLPSMVKCHAEPCPNTVDCFIAKPSEKNIFIVFMVVTAVICILLNLVELIYLVIKR
CSECAQLRRPPTAHAKNDPNWANSPSKEKDFLSCDLIFLGSDAHPPLLPDRPRAHVKKTIL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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